Resource

Id DNase-seq/ENCSR392GCEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR392GCE [biosample_summary="Homo sapiens heart tissue male embryo (120 days)"]
Description
Labels
  • accession: ENCSR392GCE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000948/
  • biosample_summary: Homo sapiens heart tissue male embryo (120 days)
  • date_created: 2015-09-16T21:42:25.678573+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR392GCE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (120 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR392GCE float

DNase-seq_ENCSR392GCE
DNase-seq ENCSR392GCE [biosample_summary="Homo sapiens heart tissue male embryo (120 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR392GCE [0.172, 30.6]
n
16,770,037
mean
3.1
sd
2.92

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 167700370.52% 89731
chr1 1572241 0.63% 8372
chr2 1331597 0.55% 7193
chr3 1151780 0.58% 6149
chr4 895771 0.47% 4820
chr5 963146 0.53% 5157
chr6 1019482 0.60% 5497
chr7 865378 0.54% 4658
chr8 765320 0.53% 4112
chr9 694500 0.50% 3698
chr10 817998 0.61% 4394
chr11 854219 0.63% 4568
chr12 831523 0.62% 4439
chr13 462225 0.40% 2506
chr14 500646 0.47% 2662
chr15 575684 0.56% 3075
chr16 502084 0.56% 2692
chr17 665547 0.80% 3529
chr18 398756 0.50% 2173
chr19 588718 1.00% 2963
chr20 415913 0.65% 2212
chr21 183005 0.39% 975
chr22 301972 0.59% 1622
chrX 397127 0.25% 2177
chrY 15405 0.03% 88
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 89731 1 898 186.89 180
global segment-length histogram

Files

Filename Size md5
ENCFF104PCD.bed.gz 963.03 KB 369eee050ec847497ec52d6486c08ae3
ENCFF104PCD.tabix.bed.gz 862.99 KB 9e3e758698f7d388faec8360ed2e6b20
ENCFF104PCD.tabix.bed.gz.tbi 431.34 KB 1e8a886372eada58b70a9da3343ab810
genomic_resource.yaml 1.81 KB 232b88ce6e9862bf928fe408fbe49e66
statistics/