Resource

Id DNase-seq/ENCSR385XHVcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR385XHV [biosample_summary="Homo sapiens T-cell female adult (31 years)"]
Description
Labels
  • accession: ENCSR385XHV
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell female adult (31 years)
  • date_created: 2020-04-12T18:59:14.605648+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR385XHV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (31 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR385XHV float

DNase-seq_ENCSR385XHV

DNase-seq ENCSR385XHV [biosample_summary="Homo sapiens T-cell female adult (31 years)"]
HISTOGRAM FOR DNase-seq_ENCSR385XHV [0.258, 76.1]
n
6,881,985
mean
6.5
sd
8.56

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 68819850.21% 37724
chr1 700077 0.28% 3838
chr2 491763 0.20% 2711
chr3 378781 0.19% 2089
chr4 232464 0.12% 1275
chr5 310001 0.17% 1720
chr6 417837 0.24% 2277
chr7 309612 0.19% 1700
chr8 249844 0.17% 1375
chr9 263308 0.19% 1449
chr10 308885 0.23% 1698
chr11 346591 0.26% 1919
chr12 348231 0.26% 1919
chr13 135072 0.12% 743
chr14 239752 0.22% 1310
chr15 220075 0.22% 1218
chr16 286464 0.32% 1559
chr17 432802 0.52% 2365
chr18 107850 0.13% 599
chr19 466258 0.80% 2476
chr20 186561 0.29% 1034
chr21 78009 0.17% 429
chr22 170325 0.34% 933
chrX 201423 0.13% 1088
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 37724 9 580 182.43 180
global segment-length histogram

Files

Filename Size md5
ENCFF203WAC.bed.gz 420.68 KB 00e0eaa049ebb6536df6d5664e308862
ENCFF203WAC.tabix.bed.gz 380.83 KB e08c0449d847ee3a2d57b969565f9195
ENCFF203WAC.tabix.bed.gz.tbi 198.63 KB e37cde8324dd802b3104f1f9a4ff7354
genomic_resource.yaml 1.19 KB 3b608e13e94647228a99fdec8c525246
statistics/