Resource

Id DNase-seq/ENCSR385AMYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR385AMY [biosample_summary="Homo sapiens hindlimb muscle tissue male embryo (120 days)"]
Description
Labels
  • accession: ENCSR385AMY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0003663/
  • biosample_summary: Homo sapiens hindlimb muscle tissue male embryo (120 days)
  • date_created: 2015-09-16T21:43:03.892803+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR385AMY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (120 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR385AMY float

DNase-seq_ENCSR385AMY

DNase-seq ENCSR385AMY [biosample_summary="Homo sapiens hindlimb muscle tissue male embryo (120 days)"]
HISTOGRAM FOR DNase-seq_ENCSR385AMY [0.105, 28.6]
n
19,417,159
mean
2.58
sd
3.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 194171590.60% 103481
chr1 1777811 0.71% 9384
chr2 1536654 0.63% 8248
chr3 1260866 0.64% 6775
chr4 998606 0.52% 5374
chr5 1069640 0.59% 5762
chr6 1217315 0.71% 6367
chr7 965873 0.61% 5236
chr8 917538 0.63% 4865
chr9 836424 0.60% 4446
chr10 960150 0.72% 5089
chr11 981944 0.73% 5168
chr12 964557 0.72% 5055
chr13 536404 0.47% 2897
chr14 623602 0.58% 3266
chr15 618414 0.61% 3304
chr16 597452 0.66% 3220
chr17 801454 0.96% 4251
chr18 440340 0.55% 2393
chr19 673563 1.15% 3422
chr20 488422 0.76% 2652
chr21 226317 0.48% 1197
chr22 328774 0.65% 1776
chrX 575415 0.37% 3216
chrY 19624 0.03% 118
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 103481 1 820 187.64 180
global segment-length histogram

Files

Filename Size md5
ENCFF405ZLI.bed.gz 1.09 MB 89c6a6cfe9308716b3a26c23010913e8
ENCFF405ZLI.tabix.bed.gz 1013.73 KB 2746935e1ad20abebf2f99faa8dc7209
ENCFF405ZLI.tabix.bed.gz.tbi 455.21 KB 0305f567f0517e3c7dcef5c161b684fb
genomic_resource.yaml 1.23 KB 589967320e36339af22800152b05bcd6
statistics/