Resource

Id DNase-seq/ENCSR380TXBcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR380TXB [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours"]
Description
Labels
  • accession: ENCSR380TXB
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000669/
  • biosample_summary: Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours
  • date_created: 2020-04-19T18:36:48.490598+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR380TXB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR380TXB float

DNase-seq_ENCSR380TXB
DNase-seq ENCSR380TXB [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR380TXB [0.364, 64.5]
n
7,949,731
mean
7.79
sd
7.75

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 79497310.25% 43599
chr1 807831 0.32% 4411
chr2 558140 0.23% 3075
chr3 426028 0.21% 2314
chr4 280482 0.15% 1533
chr5 345677 0.19% 1913
chr6 462337 0.27% 2556
chr7 359262 0.23% 1979
chr8 287468 0.20% 1603
chr9 331853 0.24% 1825
chr10 346694 0.26% 1930
chr11 404876 0.30% 2215
chr12 410770 0.31% 2252
chr13 158551 0.14% 861
chr14 272111 0.25% 1495
chr15 263088 0.26% 1455
chr16 342768 0.38% 1860
chr17 478933 0.58% 2614
chr18 128712 0.16% 699
chr19 546752 0.93% 2904
chr20 223417 0.35% 1264
chr21 89697 0.19% 495
chr22 196775 0.39% 1084
chrX 227509 0.15% 1262
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 43599 11 860 182.34 180
global segment-length histogram

Files

Filename Size md5
ENCFF815QXW.bed.gz 478.62 KB f54d64779e4f8de340ff5ae7c06b41da
ENCFF815QXW.tabix.bed.gz 432.43 KB 1213ea9b6356f7dc288d6ae104c8a555
ENCFF815QXW.tabix.bed.gz.tbi 222.83 KB 1d87c39a3117df869ccc79c38ea4d095
genomic_resource.yaml 2.47 KB cab360ec5bc7aac8d08759119d83b0ca
statistics/