Resource

Id DNase-seq/ENCSR377CRUcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR377CRU [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-7 for 4 hours"]
Description
Labels
  • accession: ENCSR377CRU
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000669/
  • biosample_summary: Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-7 for 4 hours
  • date_created: 2020-04-20T23:45:35.925984+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR377CRU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-7 for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR377CRU float

DNase-seq_ENCSR377CRU
DNase-seq ENCSR377CRU [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-7 for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR377CRU [0.431, 63]
n
6,995,348
mean
6.45
sd
7.06

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 69953480.22% 38672
chr1 721486 0.29% 3991
chr2 487867 0.20% 2700
chr3 378506 0.19% 2115
chr4 239365 0.13% 1317
chr5 306225 0.17% 1706
chr6 410219 0.24% 2265
chr7 318377 0.20% 1788
chr8 260746 0.18% 1433
chr9 282710 0.20% 1568
chr10 305539 0.23% 1710
chr11 353747 0.26% 1961
chr12 367236 0.28% 2018
chr13 136337 0.12% 768
chr14 242524 0.23% 1343
chr15 228363 0.22% 1271
chr16 288589 0.32% 1583
chr17 423247 0.51% 2323
chr18 105425 0.13% 592
chr19 488737 0.83% 2602
chr20 199489 0.31% 1119
chr21 80067 0.17% 449
chr22 166658 0.33% 925
chrX 196241 0.13% 1086
chrY 7648 0.01% 39
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 38672 15 660 180.89 180
global segment-length histogram

Files

Filename Size md5
ENCFF223UOE.bed.gz 427.01 KB 48dc77842ddd98c1a63f6737ddf5a42d
ENCFF223UOE.tabix.bed.gz 384.64 KB 13adfdaed7a7fe4b986267d6e0095479
ENCFF223UOE.tabix.bed.gz.tbi 206.44 KB 0a0a531575bf7068d76a2aa0c4131082
genomic_resource.yaml 2.45 KB 8bfd69d799409567f06f89d6f84e1c33
statistics/