Resource

Id DNase-seq/ENCSR374VQCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR374VQC [biosample_summary="Homo sapiens right cardiac atrium tissue female adult (46 years)"]
Description
Labels
  • accession: ENCSR374VQC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002078/
  • biosample_summary: Homo sapiens right cardiac atrium tissue female adult (46 years)
  • date_created: 2019-11-01T19:05:04.337603+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR374VQC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (46 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR374VQC float

DNase-seq_ENCSR374VQC
DNase-seq ENCSR374VQC [biosample_summary="Homo sapiens right cardiac atrium tissue female adult (46 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR374VQC [0.041, 71.5]
n
39,794,201
mean
1.73
sd
3.73

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 397942011.24% 214019
chr1 3563905 1.43% 19124
chr2 2574805 1.06% 14259
chr3 1833227 0.92% 10255
chr4 1570324 0.83% 8529
chr5 1567166 0.86% 8852
chr6 1482037 0.87% 8421
chr7 2109282 1.32% 11423
chr8 1625728 1.12% 8839
chr9 2130530 1.54% 11189
chr10 1698742 1.27% 9338
chr11 2387485 1.77% 12500
chr12 1581246 1.19% 8560
chr13 676960 0.59% 3804
chr14 1326892 1.24% 6942
chr15 1126194 1.10% 6293
chr16 2058399 2.28% 10724
chr17 2861649 3.44% 14797
chr18 554952 0.69% 3186
chr19 2629879 4.49% 13501
chr20 1323639 2.05% 6933
chr21 694152 1.49% 3589
chr22 1596787 3.14% 8307
chrX 817921 0.52% 4633
chrY 2300 <0.01% 21
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 214019 1 980 185.94 180
global segment-length histogram

Files

Filename Size md5
ENCFF085ORG.bed.gz 2.19 MB 3f8f858d365545bf21d197e7fc1914fb
ENCFF085ORG.tabix.bed.gz 2.03 MB 8b3d22a3bb0ff417ed61dc570373f134
ENCFF085ORG.tabix.bed.gz.tbi 449.2 KB a0e50e1d772df8db9bbbf22650677d13
genomic_resource.yaml 1.25 KB 70a61efc2558c35bb7618a011e2fc248
statistics/