Resource

Id DNase-seq/ENCSR371CCLcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR371CCL [biosample_summary="Homo sapiens suppressor macrophage male adult (40 years)"]
Description
Labels
  • accession: ENCSR371CCL
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000862/
  • biosample_summary: Homo sapiens suppressor macrophage male adult (40 years)
  • date_created: 2018-11-29T17:36:42.319001+00:00
  • date_released: 2020-10-02
  • doi: 10.17989/ENCSR371CCL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (40 years)
  • status: released
  • submitter_comment: This dataset was originally submitted with 2 anisogenic replicates. The second replicate has been moved to ENCSR325GNM.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR371CCL float

DNase-seq_ENCSR371CCL

DNase-seq ENCSR371CCL [biosample_summary="Homo sapiens suppressor macrophage male adult (40 years)"]
HISTOGRAM FOR DNase-seq_ENCSR371CCL [0.0211, 45.3]
n
35,350,240
mean
2.76
sd
4.82

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 353502401.10% 196857
chr1 3448961 1.39% 19186
chr2 2735778 1.13% 15333
chr3 2183156 1.10% 12258
chr4 1366689 0.72% 7752
chr5 1778392 0.98% 9969
chr6 2034688 1.19% 11371
chr7 1673085 1.05% 9340
chr8 1519806 1.05% 8580
chr9 1488266 1.08% 8309
chr10 1747509 1.31% 9712
chr11 1840439 1.36% 10193
chr12 1790452 1.34% 9957
chr13 762456 0.67% 4320
chr14 1160353 1.08% 6450
chr15 1208582 1.18% 6701
chr16 1290181 1.43% 7106
chr17 1860789 2.23% 10168
chr18 692488 0.86% 3898
chr19 1546931 2.64% 8277
chr20 1059248 1.64% 5864
chr21 412633 0.88% 2332
chr22 761042 1.50% 4151
chrX 953747 0.61% 5428
chrY 34569 0.06% 202
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 196857 2 800 179.57 180
global segment-length histogram

Files

Filename Size md5
ENCFF419XZN.bed.gz 2.16 MB 10a5d5b6bbab9fdd3139db8d0becb410
ENCFF419XZN.tabix.bed.gz 1.97 MB 6608d7b090923013d94682ebbc6c6193
ENCFF419XZN.tabix.bed.gz.tbi 539.6 KB 79577d1341b1d2b683eb49d96122b40f
genomic_resource.yaml 1.34 KB 0b9730c522cdc2e8ba8159a177844bcd
statistics/