Resource
| Id | DNase-seq/ENCSR367WVH |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR367WVH [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (33 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (33 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF517TMD|/files/ENCFF517TMD/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR367WVH | float |
DNase-seq_ENCSR367WVH |
DNase-seq ENCSR367WVH [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (33 years)"]
|
 |
[0.0582, 27.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 11727222 | 0.36% | 54712 |
| chr1 | 1167309 | 0.47% | 5386 |
| chr2 | 863536 | 0.36% | 4023 |
| chr3 | 608416 | 0.31% | 2850 |
| chr4 | 411473 | 0.22% | 1917 |
| chr5 | 520383 | 0.29% | 2449 |
| chr6 | 677499 | 0.40% | 3115 |
| chr7 | 535522 | 0.34% | 2534 |
| chr8 | 423750 | 0.29% | 1996 |
| chr9 | 472560 | 0.34% | 2183 |
| chr10 | 523266 | 0.39% | 2458 |
| chr11 | 625619 | 0.46% | 2976 |
| chr12 | 581312 | 0.44% | 2737 |
| chr13 | 248356 | 0.22% | 1134 |
| chr14 | 429953 | 0.40% | 1969 |
| chr15 | 404610 | 0.40% | 1934 |
| chr16 | 447305 | 0.50% | 2096 |
| chr17 | 715212 | 0.86% | 3282 |
| chr18 | 184080 | 0.23% | 891 |
| chr19 | 749900 | 1.28% | 3387 |
| chr20 | 331423 | 0.51% | 1588 |
| chr21 | 151123 | 0.32% | 718 |
| chr22 | 284936 | 0.56% | 1367 |
| chrX | 355422 | 0.23% | 1660 |
| chrY | 14257 | 0.02% | 62 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 54712 | 1 | 1140 | 214.34 | 200 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF820RAY.bed.gz | 605.4 KB | 9c257308bb90e22266e30e8bdd963b51 |
| ENCFF820RAY.tabix.bed.gz | 559.94 KB | 23e5ec852ec4d79d051818ef36f1660a |
| ENCFF820RAY.tabix.bed.gz.tbi | 239.48 KB | 8c15a35e40cbada713ba27e75ec387e6 |
| genomic_resource.yaml | 2.13 KB | f9b572c8e2de0ab8dd5525c98a5e9b73 |
| statistics/ |