Resource
| Id | DNase-seq/ENCSR366EGE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR366EGE [biosample_summary="Homo sapiens heart tissue embryo (101 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: embryo (101 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN297ORP|/analyses/ENCAN297ORP/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF222DQW|/files/ENCFF222DQW/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 36208516 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF926JRS|/files/ENCFF926JRS/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 36049308 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR366EGE | float |
DNase-seq_ENCSR366EGE |
DNase-seq ENCSR366EGE [biosample_summary="Homo sapiens heart tissue embryo (101 days)"]
|
 |
[2, 3.14e+04] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 16687278 | 0.52% | 111091 |
| chr1 | 1535879 | 0.62% | 10225 |
| chr2 | 1368803 | 0.57% | 9110 |
| chr3 | 1157974 | 0.58% | 7710 |
| chr4 | 933968 | 0.49% | 6215 |
| chr5 | 1000469 | 0.55% | 6661 |
| chr6 | 1022775 | 0.60% | 6806 |
| chr7 | 880477 | 0.55% | 5859 |
| chr8 | 793531 | 0.55% | 5286 |
| chr9 | 677094 | 0.49% | 4508 |
| chr10 | 827334 | 0.62% | 5508 |
| chr11 | 857564 | 0.63% | 5705 |
| chr12 | 811799 | 0.61% | 5406 |
| chr13 | 505372 | 0.44% | 3360 |
| chr14 | 475650 | 0.44% | 3166 |
| chr15 | 551163 | 0.54% | 3670 |
| chr16 | 483740 | 0.54% | 3224 |
| chr17 | 621868 | 0.75% | 4144 |
| chr18 | 395963 | 0.49% | 2634 |
| chr19 | 484911 | 0.83% | 3227 |
| chr20 | 392789 | 0.61% | 2617 |
| chr21 | 186750 | 0.40% | 1245 |
| chr22 | 272770 | 0.54% | 1818 |
| chrX | 431235 | 0.28% | 2871 |
| chrY | 17400 | 0.03% | 116 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 111091 | 44 | 445 | 150.21 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF262FPE.bed.gz | 1.06 MB | 7f20235daa0253bdb2c8c84f0baca3cf |
| ENCFF262FPE.tabix.bed.gz | 928.35 KB | b347b0d45055aa096fbe16518d860b4f |
| ENCFF262FPE.tabix.bed.gz.tbi | 506.74 KB | 9af311df26b1201d35d1ea1e67f18f12 |
| genomic_resource.yaml | 2.55 KB | dc4ba93b0cc37e3fe92f8f8ed39086b1 |
| statistics/ |