Resource

Id DNase-seq/ENCSR365NDKcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR365NDK [biosample_summary="Homo sapiens ovary tissue female adult (51 years)"]
Description
Labels
  • accession: ENCSR365NDK
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000992/
  • biosample_summary: Homo sapiens ovary tissue female adult (51 years)
  • date_created: 2019-08-18T16:57:11.901748+00:00
  • date_released: 2019-11-08
  • doi: 10.17989/ENCSR365NDK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR365NDK float

DNase-seq_ENCSR365NDK

DNase-seq ENCSR365NDK [biosample_summary="Homo sapiens ovary tissue female adult (51 years)"]
HISTOGRAM FOR DNase-seq_ENCSR365NDK [6, 5.82e+03]
n
3,485,647
mean
87
sd
61.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 34856470.11% 23197
chr1 366917 0.15% 2441
chr2 247302 0.10% 1645
chr3 207312 0.10% 1380
chr4 132310 0.07% 879
chr5 157773 0.09% 1049
chr6 188256 0.11% 1255
chr7 159273 0.10% 1060
chr8 147052 0.10% 978
chr9 145350 0.11% 967
chr10 157103 0.12% 1047
chr11 193350 0.14% 1287
chr12 181404 0.14% 1207
chr13 72251 0.06% 480
chr14 111649 0.10% 741
chr15 116034 0.11% 771
chr16 137250 0.15% 915
chr17 200797 0.24% 1339
chr18 52744 0.07% 351
chr19 227976 0.39% 1517
chr20 89550 0.14% 596
chr21 34994 0.07% 234
chr22 79050 0.16% 525
chrX 79500 0.05% 530
chrY 450 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 23197 13 300 150.26 150
global segment-length histogram

Files

Filename Size md5
ENCFF442RVC.bed.gz 236.07 KB 76c13d8c002918ca49ce916d1a656a00
ENCFF442RVC.tabix.bed.gz 200.71 KB ec5356c0ab041145ff385b57ecc8ffee
ENCFF442RVC.tabix.bed.gz.tbi 144.4 KB dabf153e9e2f2561d0a2a9d1bced5704
genomic_resource.yaml 2.18 KB 99e304a69759acf5fef73df6e14926ed
statistics/