Resource
| Id | DNase-seq/ENCSR365FVU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR365FVU [biosample_summary="Homo sapiens posterior cingulate gyrus tissue male adult (78 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (78 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF423ULQ|/files/ENCFF423ULQ/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.26. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR365FVU | float |
DNase-seq_ENCSR365FVU |
DNase-seq ENCSR365FVU [biosample_summary="Homo sapiens posterior cingulate gyrus tissue male adult (78 years)"]
|
 |
[0.0645, 8.83] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 16479528 | 0.51% | 86804 |
| chr1 | 1486322 | 0.60% | 7824 |
| chr2 | 1585847 | 0.65% | 8211 |
| chr3 | 905463 | 0.46% | 4805 |
| chr4 | 480944 | 0.25% | 2561 |
| chr5 | 852851 | 0.47% | 4518 |
| chr6 | 684251 | 0.40% | 3664 |
| chr7 | 807831 | 0.51% | 4299 |
| chr8 | 755687 | 0.52% | 4004 |
| chr9 | 778690 | 0.56% | 4071 |
| chr10 | 1043451 | 0.78% | 5433 |
| chr11 | 976773 | 0.72% | 5085 |
| chr12 | 611298 | 0.46% | 3225 |
| chr13 | 307385 | 0.27% | 1612 |
| chr14 | 524721 | 0.49% | 2744 |
| chr15 | 653208 | 0.64% | 3566 |
| chr16 | 605474 | 0.67% | 3224 |
| chr17 | 785931 | 0.94% | 4190 |
| chr18 | 303670 | 0.38% | 1646 |
| chr19 | 710070 | 1.21% | 3588 |
| chr20 | 546390 | 0.85% | 2952 |
| chr21 | 225767 | 0.48% | 1156 |
| chr22 | 576263 | 1.13% | 2974 |
| chrX | 263064 | 0.17% | 1403 |
| chrY | 8177 | 0.01% | 49 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 86804 | 1 | 1200 | 189.85 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF358SPE.bed.gz | 886.67 KB | c90934884d2cec7876984efec39d3a76 |
| ENCFF358SPE.tabix.bed.gz | 817.69 KB | 80926ae0dc2fa1e0b3fa6aadbc9c265b |
| ENCFF358SPE.tabix.bed.gz.tbi | 255.77 KB | ef4603128c24a1192ae5e17055b3f14d |
| genomic_resource.yaml | 2.07 KB | ab782a87d9d08bc06c9eef957c660ef9 |
| statistics/ |