type: position_score
table:
  filename: ENCFF932KNY.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: DNase-seq_ENCSR360XIS
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'DNase-seq ENCSR360XIS [TISSUE: Homo sapiens ecto neural progenitor cell
    originated from H9]'
  description: '**status**: archived


    **biological\_replicates**: Rep 1


    **summary**: female embryo (5 days)


    **output\_type**: peaks


    **audit\_internal\_action**: Archived analysis {ENCAN330JXT|/analyses/ENCAN330JXT/}
    has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/}


    **audit\_warning**: Signal Portion of Tags (SPOT) is a measure of enrichment,
    analogous to the commonly used fraction of reads in peaks metric. ENCODE processed
    alignment files {ENCFF939WNT|/files/ENCFF939WNT/} processed by DNase-seq ENCODE3
    GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly  have
    a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher
    is considered a product of high quality data. Any sample with a SPOT1 score <0.3
    should be targeted for replacement with a higher quality sample, and a SPOT1 score
    of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally
    acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data
    standards|/data-standards/dnase-seq/})


    **audit\_warning**: Signal Portion of Tags (SPOT) is a measure of enrichment,
    analogous to the commonly used fraction of reads in peaks metric. ENCODE processed
    alignment files {ENCFF991DAZ|/files/ENCFF991DAZ/} processed by DNase-seq ENCODE3
    GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly  have
    a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher
    is considered a product of high quality data. Any sample with a SPOT1 score <0.3
    should be targeted for replacement with a higher quality sample, and a SPOT1 score
    of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally
    acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data
    standards|/data-standards/dnase-seq/})'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR360XIS
    status: released
    assay_term_name: DNase-seq
    simple_biosample_summary: female embryo (5 days)
    biosample_summary: Homo sapiens ecto neural progenitor cell originated from H9
    replication_type: isogenic
    biosample_ontology: /biosample-types/in_vitro_differentiated_cells_NTR_0000474/
    perturbed: false
    doi: 10.17989/ENCSR360XIS
    date_created: '2017-08-31T06:01:15.472932+00:00'
    date_released: '2018-02-23'
    submitter_comment: The two samples within this experiment were previously mis-annotated
      as 'neural progenitor cells' and were incorporated in ENCSR963ALV. On Feb 23,
      2018, this issue was rectified and the data were separated based on distinct
      biosample term names.