Resource
| Id | DNase-seq/ENCSR356RNZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR356RNZ [biosample_summary="Homo sapiens heart right ventricle tissue female adult (46 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (46 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF843ZFJ|/files/ENCFF843ZFJ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR356RNZ | float |
DNase-seq_ENCSR356RNZ |
DNase-seq ENCSR356RNZ [biosample_summary="Homo sapiens heart right ventricle tissue female adult (46 years)"]
|
 |
[0.0456, 24.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 24496563 | 0.76% | 123408 |
| chr1 | 2162118 | 0.87% | 10939 |
| chr2 | 2393242 | 0.99% | 11987 |
| chr3 | 1346453 | 0.68% | 6810 |
| chr4 | 713581 | 0.38% | 3626 |
| chr5 | 1164552 | 0.64% | 5859 |
| chr6 | 1053052 | 0.62% | 5399 |
| chr7 | 1206031 | 0.76% | 6109 |
| chr8 | 1119647 | 0.77% | 5715 |
| chr9 | 1128338 | 0.82% | 5626 |
| chr10 | 1406602 | 1.05% | 7134 |
| chr11 | 1418919 | 1.05% | 6986 |
| chr12 | 914502 | 0.69% | 4639 |
| chr13 | 439935 | 0.38% | 2292 |
| chr14 | 839805 | 0.78% | 4198 |
| chr15 | 1006081 | 0.99% | 5130 |
| chr16 | 912294 | 1.01% | 4607 |
| chr17 | 1256445 | 1.51% | 6229 |
| chr18 | 540417 | 0.67% | 2733 |
| chr19 | 1007004 | 1.72% | 4884 |
| chr20 | 776303 | 1.20% | 3986 |
| chr21 | 377227 | 0.81% | 1903 |
| chr22 | 805960 | 1.59% | 3961 |
| chrX | 507070 | 0.32% | 2649 |
| chrY | 985 | <0.01% | 7 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 123408 | 1 | 1100 | 198.5 | 196 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF745QII.bed.gz | 1.24 MB | ce99b3d23ff8c683592d77a570beb6e6 |
| ENCFF745QII.tabix.bed.gz | 1.15 MB | 8d299b0cfcb98553ce5e8598aa0563bb |
| ENCFF745QII.tabix.bed.gz.tbi | 299.17 KB | 4873806b9d64da31ab78042e21707d62 |
| genomic_resource.yaml | 2.08 KB | f3f91eecf92bd4808043a9a8b0bbebf0 |
| statistics/ |