Resource

Id DNase-seq/ENCSR354SDHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR354SDH [biosample_summary="Homo sapiens T-cell female adult (33 years)"]
Description
Labels
  • accession: ENCSR354SDH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell female adult (33 years)
  • date_created: 2020-04-18T05:18:58.618895+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR354SDH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR354SDH float

DNase-seq_ENCSR354SDH

DNase-seq ENCSR354SDH [biosample_summary="Homo sapiens T-cell female adult (33 years)"]
HISTOGRAM FOR DNase-seq_ENCSR354SDH [0.083, 37.9]
n
10,324,872
mean
3.81
sd
4.27

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 103248720.32% 46729
chr1 1043471 0.42% 4647
chr2 772869 0.32% 3538
chr3 531379 0.27% 2399
chr4 319425 0.17% 1436
chr5 449550 0.25% 2022
chr6 554862 0.32% 2482
chr7 464223 0.29% 2088
chr8 395613 0.27% 1864
chr9 424756 0.31% 1944
chr10 449569 0.34% 2036
chr11 543991 0.40% 2501
chr12 500905 0.38% 2227
chr13 201930 0.18% 880
chr14 376934 0.35% 1690
chr15 333227 0.33% 1555
chr16 425421 0.47% 1884
chr17 680086 0.82% 3036
chr18 157959 0.20% 744
chr19 661324 1.13% 2920
chr20 292783 0.45% 1371
chr21 149382 0.32% 713
chr22 299074 0.59% 1431
chrX 296139 0.19% 1321
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 46729 1 1180 220.95 200
global segment-length histogram

Files

Filename Size md5
ENCFF870FOG.bed.gz 513.5 KB 167641fe753cdcf0071a27ec24882de0
ENCFF870FOG.tabix.bed.gz 473.8 KB 8f936bce78b7d469563a31ce0f21423a
ENCFF870FOG.tabix.bed.gz.tbi 201.77 KB 9e56b1f836d07730b47fc49b8a2989c0
genomic_resource.yaml 1.19 KB dd6b732eb2491364583c508bb0272f54
statistics/