Resource

Id DNase-seq/ENCSR344FLHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR344FLH [biosample_summary="Homo sapiens brain tissue female embryo (109 days)"]
Description
Labels
  • accession: ENCSR344FLH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000955/
  • biosample_summary: Homo sapiens brain tissue female embryo (109 days)
  • date_created: 2015-09-16T21:42:27.274122+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR344FLH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (109 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR344FLH float

DNase-seq_ENCSR344FLH
DNase-seq ENCSR344FLH [biosample_summary="Homo sapiens brain tissue female embryo (109 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR344FLH [0.216, 28.5]
n
11,673,821
mean
3.03
sd
3.26

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 116738210.36% 65798
chr1 1001710 0.40% 5663
chr2 948965 0.39% 5374
chr3 783135 0.39% 4442
chr4 641439 0.34% 3677
chr5 674803 0.37% 3816
chr6 696637 0.41% 3919
chr7 640295 0.40% 3619
chr8 592885 0.41% 3350
chr9 492050 0.36% 2747
chr10 529919 0.40% 3013
chr11 601400 0.45% 3374
chr12 575820 0.43% 3229
chr13 331603 0.29% 1911
chr14 384865 0.36% 2157
chr15 347456 0.34% 1975
chr16 369711 0.41% 2066
chr17 436859 0.52% 2420
chr18 283389 0.35% 1619
chr19 407514 0.70% 2129
chr20 285817 0.44% 1646
chr21 132249 0.28% 741
chr22 173170 0.34% 971
chrX 341830 0.22% 1938
chrY 300 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 65798 6 780 177.42 180
global segment-length histogram

Files

Filename Size md5
ENCFF460YFR.bed.gz 695.77 KB b27902d33979518a825a28a668b7e518
ENCFF460YFR.tabix.bed.gz 619.6 KB 630fb811891c7f16adf5742b8d3ab064
ENCFF460YFR.tabix.bed.gz.tbi 376.41 KB 2026830cbff48c0a78b0e3e475d9e587
genomic_resource.yaml 1.82 KB c122f5dda0aff79d716b59bd69757634
statistics/