Resource

Id DNase-seq/ENCSR343MCIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR343MCI [biosample_summary="Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour"]
Description
Labels
  • accession: ENCSR343MCI
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000537/
  • biosample_summary: Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour
  • date_created: 2020-03-30T19:01:27.820265+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR343MCI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR343MCI float

DNase-seq_ENCSR343MCI
DNase-seq ENCSR343MCI [biosample_summary="Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR343MCI [0.0531, 71.3]
n
15,464,687
mean
4.38
sd
6.69

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 154646870.48% 68865
chr1 1528281 0.61% 6655
chr2 1187525 0.49% 5338
chr3 720881 0.36% 3253
chr4 474417 0.25% 2110
chr5 632730 0.35% 2823
chr6 796500 0.47% 3537
chr7 739756 0.46% 3304
chr8 566408 0.39% 2645
chr9 639988 0.46% 2851
chr10 661653 0.49% 3028
chr11 842837 0.62% 3771
chr12 708669 0.53% 3107
chr13 314819 0.28% 1367
chr14 547641 0.51% 2408
chr15 503845 0.49% 2262
chr16 673300 0.75% 2998
chr17 1069699 1.28% 4688
chr18 280968 0.35% 1244
chr19 979546 1.67% 4319
chr20 436608 0.68% 1991
chr21 235462 0.50% 1084
chr22 472315 0.93% 2144
chrX 450746 0.29% 1937
chrY 93 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 68865 1 1220 224.57 200
global segment-length histogram

Files

Filename Size md5
ENCFF094MWH.bed.gz 754.67 KB e03a949e07eeda9b169e31c8b81d8586
ENCFF094MWH.tabix.bed.gz 701.27 KB 0e47eaddab862182056e12f95ba43d09
ENCFF094MWH.tabix.bed.gz.tbi 236.44 KB 0d6ff735f1fe03d6366d15f6b0e5f8bf
genomic_resource.yaml 1.7 KB 039515bb901bb2f07d459903c45da9fa
statistics/