Resource

Id DNase-seq/ENCSR338NEIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR338NEI [biosample_summary="Homo sapiens pancreas tissue female adult (41 years)"]
Description
Labels
  • accession: ENCSR338NEI
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001264/
  • biosample_summary: Homo sapiens pancreas tissue female adult (41 years)
  • date_created: 2019-11-01T19:22:26.726133+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR338NEI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (41 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR338NEI float

DNase-seq_ENCSR338NEI
DNase-seq ENCSR338NEI [biosample_summary="Homo sapiens pancreas tissue female adult (41 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR338NEI [0.0399, 24.9]
n
29,368,220
mean
1.31
sd
2.01

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 293682200.91% 138803
chr1 2601291 1.04% 12165
chr2 2334658 0.96% 10996
chr3 1336452 0.67% 6400
chr4 1015275 0.53% 4723
chr5 1199511 0.66% 5742
chr6 1055508 0.62% 5021
chr7 1677298 1.05% 7792
chr8 1240359 0.85% 5772
chr9 1575131 1.14% 7226
chr10 1572064 1.17% 7364
chr11 1969385 1.46% 9163
chr12 1096733 0.82% 5380
chr13 485046 0.42% 2242
chr14 1023307 0.96% 4847
chr15 951193 0.93% 4561
chr16 1314781 1.46% 6324
chr17 1895072 2.28% 9093
chr18 446307 0.56% 2086
chr19 1207098 2.06% 5953
chr20 940020 1.46% 4491
chr21 521655 1.12% 2445
chr22 1213313 2.39% 5628
chrX 694697 0.45% 3374
chrY 2066 <0.01% 15
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 138803 1 1160 211.58 200
global segment-length histogram

Files

Filename Size md5
ENCFF949DIO.bed.gz 1.38 MB 05d9ad6f28f9699c69908de7b7f9064c
ENCFF949DIO.tabix.bed.gz 1.3 MB b75555b84483f556a993c78135657a57
ENCFF949DIO.tabix.bed.gz.tbi 281.13 KB 887a7e844b6b8640c2b68124ac109e0e
genomic_resource.yaml 1.21 KB fe5691a5322cbc4f90513957477dfccd
statistics/