Resource

Id DNase-seq/ENCSR337IRFcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR337IRF [biosample_summary="Homo sapiens RCC"]
Description
Labels
  • accession: ENCSR337IRF
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0000681/
  • biosample_summary: Homo sapiens RCC
  • date_created: 2017-11-01T21:39:53.934989+00:00
  • date_released: 2018-05-09
  • doi: 10.17989/ENCSR337IRF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR337IRF float

DNase-seq_ENCSR337IRF
DNase-seq ENCSR337IRF [biosample_summary="Homo sapiens RCC"]
 HISTOGRAM FOR DNase-seq_ENCSR337IRF [0.0244, 30.4]
n
53,913,340
mean
1.49
sd
2.25

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 539133401.68% 272276
chr1 4921020 1.98% 24741
chr2 4598595 1.90% 23312
chr3 3337366 1.68% 16922
chr4 2979992 1.57% 15251
chr5 3309045 1.82% 16570
chr6 3335837 1.95% 16765
chr7 2756647 1.73% 13998
chr8 2613656 1.80% 13157
chr9 2348204 1.70% 11857
chr10 2681893 2.00% 13531
chr11 2693684 1.99% 13602
chr12 2549180 1.91% 12892
chr13 1519308 1.33% 7716
chr14 1651615 1.54% 8311
chr15 1731322 1.70% 8698
chr16 1579693 1.75% 8014
chr17 2004155 2.41% 10035
chr18 1318015 1.64% 6692
chr19 1428600 2.44% 7111
chr20 1347280 2.09% 6828
chr21 580882 1.24% 2879
chr22 906791 1.78% 4521
chrX 1718955 1.10% 8861
chrY 1605 <0.01% 12
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 272276 1 1420 198.01 200
global segment-length histogram

Files

Filename Size md5
ENCFF875AXC.bed.gz 2.93 MB e63427a8d83fa3379b1c8a1dec762080
ENCFF875AXC.tabix.bed.gz 2.68 MB 7d972e697b95b7442023810cad85bacd
ENCFF875AXC.tabix.bed.gz.tbi 749.86 KB f667b095444c22b8c355764045656686
genomic_resource.yaml 1.06 KB d9e13659a6af048d62954e95cb013097
statistics/