Resource

Id DNase-seq/ENCSR336QAOcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR336QAO [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (26 years) treated with Interferon gamma for 1 hour"]
Description
Labels
  • accession: ENCSR336QAO
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell female adult (26 years) treated with Interferon gamma for 1 hour
  • date_created: 2018-11-30T18:43:53.939203+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR336QAO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (26 years) treated with Interferon gamma for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR336QAO float

DNase-seq_ENCSR336QAO
DNase-seq ENCSR336QAO [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (26 years) treated with Interferon gamma for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR336QAO [0.0497, 208]
n
13,312,203
mean
7.34
sd
16

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 133122030.41% 71107
chr1 1314814 0.53% 7073
chr2 933277 0.39% 5017
chr3 721478 0.36% 3870
chr4 446634 0.23% 2404
chr5 588712 0.32% 3167
chr6 776842 0.45% 4156
chr7 607400 0.38% 3274
chr8 488980 0.34% 2679
chr9 540985 0.39% 2924
chr10 606029 0.45% 3279
chr11 683660 0.51% 3661
chr12 680604 0.51% 3636
chr13 249762 0.22% 1333
chr14 462431 0.43% 2452
chr15 429974 0.42% 2325
chr16 549267 0.61% 2913
chr17 821806 0.99% 4305
chr18 218657 0.27% 1194
chr19 904054 1.54% 4570
chr20 403158 0.63% 2168
chr21 168062 0.36% 911
chr22 345117 0.68% 1834
chrX 370000 0.24% 1958
chrY 500 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 71107 7 820 187.21 180
global segment-length histogram

Files

Filename Size md5
ENCFF237LVS.bed.gz 811.2 KB d7fa1665528a824b06940b3b33a68ce5
ENCFF237LVS.tabix.bed.gz 737.08 KB 279487adcfd07b324f503af63ce71ad6
ENCFF237LVS.tabix.bed.gz.tbi 289.88 KB b4d56e184a37b8384223b6bc4109b2ae
genomic_resource.yaml 1.47 KB bce97f427bccfacc58d83a9546c5a26a
statistics/