Resource

Id DNase-seq/ENCSR335LOQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR335LOQ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-7 for 48 hours"]
Description
Labels
  • accession: ENCSR335LOQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000669/
  • biosample_summary: Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-7 for 48 hours
  • date_created: 2020-04-20T23:45:38.697004+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR335LOQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-7 for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR335LOQ float

DNase-seq_ENCSR335LOQ
DNase-seq ENCSR335LOQ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-7 for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR335LOQ [0.395, 59.1]
n
8,911,675
mean
7.4
sd
7.35

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 89116750.28% 50988
chr1 895135 0.36% 5132
chr2 650630 0.27% 3761
chr3 511402 0.26% 2945
chr4 309341 0.16% 1772
chr5 403064 0.22% 2352
chr6 536274 0.31% 3067
chr7 402269 0.25% 2296
chr8 348320 0.24% 2037
chr9 372623 0.27% 2143
chr10 398473 0.30% 2309
chr11 444078 0.33% 2524
chr12 449978 0.34% 2583
chr13 179959 0.16% 1048
chr14 308060 0.29% 1751
chr15 299185 0.29% 1734
chr16 371583 0.41% 2088
chr17 516794 0.62% 2928
chr18 144872 0.18% 852
chr19 567428 0.97% 3062
chr20 255060 0.40% 1480
chr21 101082 0.22% 575
chr22 212027 0.42% 1204
chrX 225173 0.14% 1292
chrY 8865 0.02% 53
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 50988 5 780 174.78 169
global segment-length histogram

Files

Filename Size md5
ENCFF380LVF.bed.gz 553.85 KB e7c7767b812429098952e130ee020d90
ENCFF380LVF.tabix.bed.gz 498.07 KB a16b6714f52782291d61d7ad4b87ad8f
ENCFF380LVF.tabix.bed.gz.tbi 255.35 KB ca57ea349b2c456609326b8527effa68
genomic_resource.yaml 2.46 KB b0cb5e44fbcbaced74a257e52ab20519
statistics/