Resource

Id DNase-seq/ENCSR332BSBcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR332BSB [biosample_summary="Homo sapiens right kidney tissue male embryo (87 days)"]
Description
Labels
  • accession: ENCSR332BSB
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0004539/
  • biosample_summary: Homo sapiens right kidney tissue male embryo (87 days)
  • date_created: 2015-09-16T21:43:06.090424+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR332BSB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (87 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR332BSB float

DNase-seq_ENCSR332BSB
DNase-seq ENCSR332BSB [biosample_summary="Homo sapiens right kidney tissue male embryo (87 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR332BSB [0.207, 27.5]
n
12,243,934
mean
3.19
sd
3.37

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 122439340.38% 65681
chr1 1126638 0.45% 6041
chr2 966790 0.40% 5210
chr3 788064 0.40% 4216
chr4 637652 0.34% 3463
chr5 654312 0.36% 3558
chr6 723659 0.42% 3833
chr7 623539 0.39% 3358
chr8 554876 0.38% 2971
chr9 509145 0.37% 2740
chr10 607371 0.45% 3244
chr11 623018 0.46% 3379
chr12 620309 0.47% 3313
chr13 319343 0.28% 1717
chr14 394714 0.37% 2067
chr15 404819 0.40% 2163
chr16 392009 0.43% 2120
chr17 504018 0.61% 2695
chr18 279615 0.35% 1529
chr19 537465 0.92% 2699
chr20 314115 0.49% 1730
chr21 133890 0.29% 728
chr22 212143 0.42% 1175
chrX 306817 0.20% 1686
chrY 9613 0.02% 46
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 65681 3 800 186.42 180
global segment-length histogram

Files

Filename Size md5
ENCFF408YVL.bed.gz 699.26 KB 3286dc9899a0a67c7ef5e2cd61e0cdcb
ENCFF408YVL.tabix.bed.gz 625.38 KB 4544a69c67c022a04c373ed6f9dbde0f
ENCFF408YVL.tabix.bed.gz.tbi 341.78 KB dc2b51017ceda3ff812611b030ca92d2
genomic_resource.yaml 1.83 KB f7c797d13788c03ee9cf7ba24f3cedd7
statistics/