Resource
| Id | DNase-seq/ENCSR330LFP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR330LFP [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (82 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (82 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF355CPA|/files/ENCFF355CPA/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR330LFP | float |
DNase-seq_ENCSR330LFP |
DNase-seq ENCSR330LFP [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (82 years)"]
|
 |
[0.0531, 15.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 25949981 | 0.81% | 132751 |
| chr1 | 2351973 | 0.94% | 12035 |
| chr2 | 2378176 | 0.98% | 12123 |
| chr3 | 1382402 | 0.70% | 7055 |
| chr4 | 756730 | 0.40% | 3786 |
| chr5 | 1213613 | 0.67% | 6229 |
| chr6 | 1124862 | 0.66% | 5761 |
| chr7 | 1337765 | 0.84% | 6872 |
| chr8 | 1187423 | 0.82% | 6065 |
| chr9 | 1167298 | 0.84% | 5955 |
| chr10 | 1508714 | 1.13% | 7743 |
| chr11 | 1477906 | 1.09% | 7523 |
| chr12 | 1065671 | 0.80% | 5513 |
| chr13 | 544242 | 0.48% | 2822 |
| chr14 | 808825 | 0.76% | 4083 |
| chr15 | 1007130 | 0.99% | 5200 |
| chr16 | 959891 | 1.06% | 4965 |
| chr17 | 1370157 | 1.65% | 7031 |
| chr18 | 568711 | 0.71% | 2854 |
| chr19 | 1078449 | 1.84% | 5382 |
| chr20 | 874485 | 1.36% | 4628 |
| chr21 | 378257 | 0.81% | 1937 |
| chr22 | 921093 | 1.81% | 4643 |
| chrX | 485293 | 0.31% | 2539 |
| chrY | 915 | <0.01% | 7 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 132751 | 1 | 1060 | 195.48 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF234IMJ.bed.gz | 1.33 MB | cc12417bbc4b86603a923472429bd3ac |
| ENCFF234IMJ.tabix.bed.gz | 1.23 MB | 4965850a6bbf7e244f75a4d9a32fd10f |
| ENCFF234IMJ.tabix.bed.gz.tbi | 312.62 KB | 1d7884ba9b86266b84d7786b9f01143d |
| genomic_resource.yaml | 2.08 KB | c50f61f517faccd26a105bd8a03f864f |
| statistics/ |