Resource

Id DNase-seq/ENCSR324SGEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR324SGE [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours"]
Description
Labels
  • accession: ENCSR324SGE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours
  • date_created: 2020-04-19T18:36:58.678978+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR324SGE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR324SGE float

DNase-seq_ENCSR324SGE
DNase-seq ENCSR324SGE [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR324SGE [0.414, 56.3]
n
7,489,600
mean
7
sd
7.11

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 74896000.23% 41791
chr1 764178 0.31% 4239
chr2 526661 0.22% 2964
chr3 437405 0.22% 2450
chr4 264382 0.14% 1479
chr5 339507 0.19% 1912
chr6 446001 0.26% 2501
chr7 340207 0.21% 1918
chr8 294751 0.20% 1661
chr9 313684 0.23% 1727
chr10 328955 0.25% 1856
chr11 379701 0.28% 2126
chr12 398314 0.30% 2207
chr13 155624 0.14% 857
chr14 257617 0.24% 1458
chr15 241946 0.24% 1375
chr16 310126 0.34% 1713
chr17 420778 0.51% 2326
chr18 117538 0.15% 683
chr19 481877 0.82% 2552
chr20 208362 0.32% 1193
chr21 86868 0.19% 500
chr22 174129 0.34% 969
chrX 193498 0.12% 1083
chrY 7491 0.01% 42
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 41791 3 660 179.22 180
global segment-length histogram

Files

Filename Size md5
ENCFF398WNG.bed.gz 456.36 KB 0ae7dedf79ba62f3f1cd9563283135ac
ENCFF398WNG.tabix.bed.gz 408.06 KB e0258f7110dc6e735a68a06ab98b9e20
ENCFF398WNG.tabix.bed.gz.tbi 223.29 KB edb4430a914a382964efbbeb5e14eede
genomic_resource.yaml 2.44 KB 3f23adfeeb86a60eb789207d4bfc264b
statistics/