Resource

Id DNase-seq/ENCSR323UTXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR323UTX [biosample_summary="Homo sapiens upper lobe of left lung tissue female adult (51 years)"]
Description
Labels
  • accession: ENCSR323UTX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0008952/
  • biosample_summary: Homo sapiens upper lobe of left lung tissue female adult (51 years)
  • date_created: 2019-08-18T16:56:38.578289+00:00
  • date_released: 2019-11-08
  • doi: 10.17989/ENCSR323UTX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR323UTX float

DNase-seq_ENCSR323UTX
DNase-seq ENCSR323UTX [biosample_summary="Homo sapiens upper lobe of left lung tissue female adult (51 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR323UTX [0.0427, 27.8]
n
23,545,662
mean
1.9
sd
2.39

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 235456620.73% 129379
chr1 2195389 0.88% 12111
chr2 1917874 0.79% 10587
chr3 1323751 0.67% 7369
chr4 828217 0.44% 4609
chr5 1100646 0.61% 6077
chr6 1176034 0.69% 6587
chr7 1153637 0.72% 6378
chr8 1055419 0.73% 5777
chr9 1082661 0.78% 5905
chr10 1303507 0.97% 7113
chr11 1282842 0.95% 6992
chr12 1051349 0.79% 5767
chr13 481671 0.42% 2676
chr14 818145 0.76% 4521
chr15 819261 0.80% 4523
chr16 892833 0.99% 4888
chr17 1260751 1.51% 6791
chr18 428208 0.53% 2432
chr19 1079687 1.84% 5684
chr20 727023 1.13% 4036
chr21 323549 0.69% 1788
chr22 723108 1.42% 3870
chrX 518773 0.33% 2886
chrY 1327 <0.01% 12
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 129379 1 880 181.99 180
global segment-length histogram

Files

Filename Size md5
ENCFF041XPT.bed.gz 1.37 MB 55f82e34413de5ae30de822c3df4e5d8
ENCFF041XPT.tabix.bed.gz 1.25 MB 1ad65f26d38c315a478485ec401b0bef
ENCFF041XPT.tabix.bed.gz.tbi 392.32 KB 2b4f24d38f8283933289a1aea0969699
genomic_resource.yaml 1.26 KB 85fa7d341ad887b455a600aca4257bff
statistics/