Resource

Id DNase-seq/ENCSR323TXQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR323TXQ [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-23 for 48 hours, 100 ng/mL Interleukin-1b for 48 hours"]
Description
Labels
  • accession: ENCSR323TXQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-23 for 48 hours, 100 ng/mL Interleukin-1b for 48 hours
  • date_created: 2020-04-19T18:36:59.062322+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR323TXQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-23 for 48 hours, 100 ng/mL Interleukin-1b for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR323TXQ float

DNase-seq_ENCSR323TXQ
DNase-seq ENCSR323TXQ [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-23 for 48 hours, 100 ng/mL Interleukin-1b for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR323TXQ [0.109, 64.7]
n
14,199,361
mean
4.89
sd
7.07

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 141993610.44% 77658
chr1 1415317 0.57% 7741
chr2 1032746 0.43% 5719
chr3 810422 0.41% 4459
chr4 512913 0.27% 2841
chr5 651641 0.36% 3590
chr6 850237 0.50% 4645
chr7 634810 0.40% 3502
chr8 585326 0.40% 3257
chr9 584903 0.42% 3196
chr10 657598 0.49% 3623
chr11 706175 0.52% 3857
chr12 713633 0.54% 3858
chr13 299118 0.26% 1645
chr14 482608 0.45% 2673
chr15 472862 0.46% 2611
chr16 569902 0.63% 3059
chr17 801228 0.96% 4295
chr18 242223 0.30% 1353
chr19 820601 1.40% 4279
chr20 410079 0.64% 2265
chr21 172390 0.37% 952
chr22 334450 0.66% 1830
chrX 419228 0.27% 2303
chrY 18951 0.03% 105
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 77658 1 740 182.84 180
global segment-length histogram

Files

Filename Size md5
ENCFF339UXX.bed.gz 871.17 KB 589697ffe649d2a273d03ff5477f2f84
ENCFF339UXX.tabix.bed.gz 792.28 KB 0566dc3cbb3939cc4083e96e99b44461
ENCFF339UXX.tabix.bed.gz.tbi 320.33 KB f281e304c4b4bb698dbf992359522b0a
genomic_resource.yaml 2.04 KB 9947e9159ff69f627d9e06e58126c7b9
statistics/