Resource

Id DNase-seq/ENCSR323PWVcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR323PWV [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-23 for 48 hours, 100 ng/mL Interleukin-1b for 48 hours"]
Description
Labels
  • accession: ENCSR323PWV
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-23 for 48 hours, 100 ng/mL Interleukin-1b for 48 hours
  • date_created: 2020-04-20T23:45:57.199155+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR323PWV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-23 for 48 hours, 100 ng/mL Interleukin-1b for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR323PWV float

DNase-seq_ENCSR323PWV
DNase-seq ENCSR323PWV [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-23 for 48 hours, 100 ng/mL Interleukin-1b for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR323PWV [0.28, 23.3]
n
8,755,991
mean
3.66
sd
3.15

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 87559910.27% 46622
chr1 892816 0.36% 4700
chr2 601191 0.25% 3242
chr3 503386 0.25% 2673
chr4 318094 0.17% 1683
chr5 399425 0.22% 2162
chr6 527367 0.31% 2798
chr7 408608 0.26% 2181
chr8 331556 0.23% 1811
chr9 362676 0.26% 1950
chr10 385494 0.29% 2066
chr11 438130 0.32% 2366
chr12 462722 0.35% 2430
chr13 180949 0.16% 959
chr14 301745 0.28% 1592
chr15 289657 0.28% 1561
chr16 358692 0.40% 1906
chr17 515489 0.62% 2707
chr18 137023 0.17% 739
chr19 554151 0.95% 2831
chr20 238414 0.37% 1312
chr21 108369 0.23% 582
chr22 204650 0.40% 1084
chrX 227366 0.15% 1244
chrY 8021 0.01% 43
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 46622 7 860 187.81 180
global segment-length histogram

Files

Filename Size md5
ENCFF042JET.bed.gz 503.71 KB d3fbc1b217935ee581e7450dbd780b35
ENCFF042JET.tabix.bed.gz 456.38 KB 599d88bc38ac69aedcfe9b1af5f19f95
ENCFF042JET.tabix.bed.gz.tbi 238.3 KB b0de84e1e95a9e808e54b8af719be619
genomic_resource.yaml 2.65 KB 1c0008586ef38a0e536d0b824894a273
statistics/