Resource

Id	DNase-seq/ENCSR323LVJcontent_copy
Type	position_score
Version	0
Summary	DNase-seq ENCSR323LVJ [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (37 years) treated with 100 ng/mL Interleukin-6 for 8 hours, 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours"]
Description
Labels	accession: ENCSR323LVJ assay_term_name: DNase-seq biosample_ontology: /biosample-types/primary_cell_CL_0000896/ biosample_summary: Homo sapiens activated CD4-positive, alpha-beta T cell female adult (37 years) treated with 100 ng/mL Interleukin-6 for 8 hours, 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours date_created: 2018-11-30T18:43:55.044376+00:00 date_released: 2020-09-23 doi: 10.17989/ENCSR323LVJ perturbed: False reference_genome: hg38/genomes/GRCh38-hg38 replication_type: unreplicated simple_biosample_summary: female adult (37 years) treated with 100 ng/mL Interleukin-6 for 8 hours, 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours status: released submitter_comment: The experiment biosample had only one associated treatment Interleukin-6 (UniProtKB:P05231) for 8 hours. Treatments anti-CD3 and anti-CD28 coated beads for 16 hours & 50 U/mL Interleukin-2 (UniProtKB:P60568) for 16 hours have been added to the biosample on 11/04/21.

Scores (1)

ID	Type	Default annotation	Description	Histogram	Range	Summary
DNase-seq_ENCSR323LVJ	float	DNase-seq_ENCSR323LVJ	DNase-seq ENCSR323LVJ [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (37 years) treated with 100 ng/mL Interleukin-6 for 8 hours, 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours"]		[0.0419, 26]	n 24,657,017 mean 2.11 sd 3.01

n counts base pairs; sd is the population standard deviation.

Chromosome	Covered positions	Covered %	Segments
all chromosomes	24657017	0.77%	125988
chr1	2414392	0.97%	12293
chr2	1921037	0.79%	9793
chr3	1576215	0.79%	8073
chr4	1055028	0.55%	5474
chr5	1231773	0.68%	6325
chr6	1574434	0.92%	7917
chr7	1167207	0.73%	6019
chr8	1078117	0.74%	5555
chr9	1009851	0.73%	5172
chr10	1178059	0.88%	6015
chr11	1172157	0.87%	6039
chr12	1236048	0.93%	6296
chr13	574995	0.50%	2976
chr14	853267	0.80%	4320
chr15	814525	0.80%	4208
chr16	871689	0.96%	4404
chr17	1209525	1.45%	6084
chr18	474666	0.59%	2473
chr19	1029167	1.76%	5141
chr20	635732	0.99%	3303
chr21	284797	0.61%	1461
chr22	495961	0.98%	2532
chrX	797850	0.51%	4110
chrY	525	<0.01%	5
3342 contigs with no values (129077085 bp)	0	0.00%	0

	segments	min	max	mean	median
segments	125988	1	860	195.71	191