Resource

Id DNase-seq/ENCSR321KUCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR321KUC [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (38 years)"]
Description
Labels
  • accession: ENCSR321KUC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000625/
  • biosample_summary: Homo sapiens CD8-positive, alpha-beta T cell male adult (38 years)
  • date_created: 2020-04-19T18:37:00.176678+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR321KUC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR321KUC float

DNase-seq_ENCSR321KUC
DNase-seq ENCSR321KUC [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (38 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR321KUC [0.235, 38.5]
n
8,421,030
mean
5.41
sd
5.45

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 84210300.26% 44506
chr1 865216 0.35% 4568
chr2 573468 0.24% 3036
chr3 456281 0.23% 2378
chr4 290003 0.15% 1502
chr5 365392 0.20% 1917
chr6 491852 0.29% 2538
chr7 386990 0.24% 2045
chr8 301841 0.21% 1624
chr9 347558 0.25% 1837
chr10 365785 0.27% 1963
chr11 441616 0.33% 2339
chr12 426728 0.32% 2271
chr13 162843 0.14% 849
chr14 295462 0.28% 1555
chr15 275690 0.27% 1468
chr16 348940 0.39% 1852
chr17 524496 0.63% 2801
chr18 127845 0.16% 692
chr19 582769 0.99% 3010
chr20 238324 0.37% 1308
chr21 100666 0.22% 539
chr22 202435 0.40% 1085
chrX 239751 0.15% 1282
chrY 9079 0.02% 47
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 44506 1 917 189.21 180
global segment-length histogram

Files

Filename Size md5
ENCFF023AUG.bed.gz 492.26 KB 9f045c7061d01471f76dd50943db8ae5
ENCFF023AUG.tabix.bed.gz 448.54 KB 67b1297ba3e489741e78afbe1c252aea
ENCFF023AUG.tabix.bed.gz.tbi 217.44 KB 00460ed9fd2ea4a9b352259fb1a37b67
genomic_resource.yaml 1.26 KB fb0c06fe818ebd6a32491eec3e55132e
statistics/