Resource

Id DNase-seq/ENCSR318WODcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR318WOD [biosample_summary="Homo sapiens lung tissue male embryo (103 days)"]
Description
Labels
  • accession: ENCSR318WOD
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002048/
  • biosample_summary: Homo sapiens lung tissue male embryo (103 days)
  • date_created: 2015-09-16T21:42:44.651556+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR318WOD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (103 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR318WOD float

DNase-seq_ENCSR318WOD
DNase-seq ENCSR318WOD [biosample_summary="Homo sapiens lung tissue male embryo (103 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR318WOD [2, 3.07e+03]
n
16,285,475
mean
56.2
sd
63.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 162854750.51% 108156
chr1 1427881 0.57% 9495
chr2 1381986 0.57% 9177
chr3 1129712 0.57% 7502
chr4 935393 0.49% 6196
chr5 966896 0.53% 6418
chr6 1051745 0.62% 6979
chr7 838880 0.53% 5563
chr8 781453 0.54% 5188
chr9 669462 0.48% 4452
chr10 817949 0.61% 5429
chr11 806937 0.60% 5363
chr12 798792 0.60% 5315
chr13 490335 0.43% 3257
chr14 503857 0.47% 3352
chr15 517195 0.51% 3435
chr16 449523 0.50% 2988
chr17 576129 0.69% 3830
chr18 406886 0.51% 2693
chr19 440843 0.75% 2935
chr20 377657 0.59% 2512
chr21 192217 0.41% 1272
chr22 234734 0.46% 1561
chrX 459763 0.29% 3050
chrY 29250 0.05% 194
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 108156 21 569 150.57 150
global segment-length histogram

Files

Filename Size md5
ENCFF251ZXX.bed.gz 1.02 MB 1282bc393fae9a9123d32d44f3c2f551
ENCFF251ZXX.tabix.bed.gz 899.31 KB 43e48eddceccd5f9709de4b5fcde4505
ENCFF251ZXX.tabix.bed.gz.tbi 491.29 KB 4028fb1bfffb514a41a32b0d51a0e3a1
genomic_resource.yaml 1.37 KB 14b864ae29a7ad8c2f73560b07ad9495
statistics/