Resource

Id DNase-seq/ENCSR318PRQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR318PRQ [biosample_summary="Homo sapiens middle frontal gyrus tissue male adult (78 years)"]
Description
Labels
  • accession: ENCSR318PRQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002702/
  • biosample_summary: Homo sapiens middle frontal gyrus tissue male adult (78 years)
  • date_created: 2015-03-27T22:04:21.873229+00:00
  • date_released: 2015-08-31
  • doi: 10.17989/ENCSR318PRQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (78 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR318PRQ float

DNase-seq_ENCSR318PRQ

DNase-seq ENCSR318PRQ [biosample_summary="Homo sapiens middle frontal gyrus tissue male adult (78 years)"]
HISTOGRAM FOR DNase-seq_ENCSR318PRQ [1, 143]
n
14,991,510
mean
28.4
sd
18

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 149915100.47% 105675
chr1 1470820 0.59% 10384
chr2 1183340 0.49% 8328
chr3 935620 0.47% 6616
chr4 635200 0.33% 4502
chr5 825930 0.45% 5816
chr6 863370 0.51% 6086
chr7 743710 0.47% 5286
chr8 650170 0.45% 4563
chr9 655520 0.47% 4586
chr10 685240 0.51% 4827
chr11 833180 0.62% 5842
chr12 759740 0.57% 5387
chr13 367300 0.32% 2587
chr14 500120 0.47% 3526
chr15 488470 0.48% 3458
chr16 538950 0.60% 3783
chr17 721310 0.87% 5139
chr18 292280 0.36% 2031
chr19 632140 1.08% 4413
chr20 414900 0.64% 2916
chr21 175850 0.38% 1253
chr22 310660 0.61% 2196
chrX 297290 0.19% 2076
chrY 10400 0.02% 74
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 105675 10 390 141.86 150
global segment-length histogram

Files

Filename Size md5
ENCFF221PAM.bed.gz 913.73 KB d0aaa246449112dad0feb4ab27e59882
ENCFF221PAM.tabix.bed.gz 849.15 KB f3318b9769ec448af990077736f95a3d
ENCFF221PAM.tabix.bed.gz.tbi 436.76 KB 97594601e6ccc61a756986c6988d96e8
genomic_resource.yaml 1.24 KB 13e5c8814cce407ffd454b982aaffc1a
statistics/