Resource

Id DNase-seq/ENCSR317SIHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR317SIH [biosample_summary="Homo sapiens muscle of back tissue male embryo (91 days)"]
Description
Labels
  • accession: ENCSR317SIH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002324/
  • biosample_summary: Homo sapiens muscle of back tissue male embryo (91 days)
  • date_created: 2015-09-16T21:42:58.696946+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR317SIH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (91 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR317SIH float

DNase-seq_ENCSR317SIH
DNase-seq ENCSR317SIH [biosample_summary="Homo sapiens muscle of back tissue male embryo (91 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR317SIH [6, 2.2e+04]
n
58,890,737
mean
226
sd
433

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 588907371.83% 391725
chr1 4966907 2.00% 33044
chr2 4920730 2.03% 32727
chr3 3916968 1.98% 26043
chr4 3310913 1.74% 21993
chr5 3514616 1.94% 23361
chr6 3518252 2.06% 23415
chr7 3094765 1.94% 20596
chr8 2876670 1.98% 19136
chr9 2522855 1.82% 16792
chr10 2930706 2.19% 19504
chr11 2911696 2.16% 19368
chr12 2770879 2.08% 18428
chr13 1820407 1.59% 12112
chr14 1909418 1.78% 12708
chr15 1848807 1.81% 12302
chr16 1729804 1.91% 11518
chr17 2166033 2.60% 14419
chr18 1454886 1.81% 9669
chr19 1476364 2.52% 9831
chr20 1433846 2.22% 9535
chr21 774052 1.66% 5149
chr22 900358 1.77% 5997
chrX 2010959 1.29% 13349
chrY 109846 0.19% 729
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 391725 1 450 150.34 150
global segment-length histogram

Files

Filename Size md5
ENCFF785PSO.bed.gz 3.7 MB 37c378462a3b783ad50801e6d16dba88
ENCFF785PSO.tabix.bed.gz 3.19 MB eab418226102220a957028697c5e1a4b
ENCFF785PSO.tabix.bed.gz.tbi 855.92 KB a67d87686166ca0f231a8ead84af2e72
genomic_resource.yaml 1.4 KB c897071b6d725311b5ca4abc038b2025
statistics/