Resource

Id DNase-seq/ENCSR315WACcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR315WAC [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours"]
Description
Labels
  • accession: ENCSR315WAC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours
  • date_created: 2020-04-19T18:36:59.356789+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR315WAC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR315WAC float

DNase-seq_ENCSR315WAC
DNase-seq ENCSR315WAC [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR315WAC [0.285, 52.6]
n
8,932,240
mean
5.73
sd
5.47

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 89322400.28% 48871
chr1 899078 0.36% 4900
chr2 628211 0.26% 3457
chr3 497840 0.25% 2731
chr4 329916 0.17% 1773
chr5 395041 0.22% 2193
chr6 517879 0.30% 2817
chr7 408176 0.26% 2248
chr8 339175 0.23% 1868
chr9 378078 0.27% 2077
chr10 396694 0.30% 2185
chr11 452237 0.33% 2495
chr12 452407 0.34% 2451
chr13 179742 0.16% 979
chr14 297297 0.28% 1630
chr15 294049 0.29% 1638
chr16 374987 0.42% 2039
chr17 527107 0.63% 2844
chr18 146116 0.18% 814
chr19 606405 1.03% 3207
chr20 256748 0.40% 1444
chr21 100633 0.22% 557
chr22 210743 0.41% 1172
chrX 235752 0.15% 1304
chrY 7929 0.01% 48
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 48871 1 820 182.77 180
global segment-length histogram

Files

Filename Size md5
ENCFF863BNN.bed.gz 533.7 KB 360d9f5b5d6c9a4f13f418db523f899b
ENCFF863BNN.tabix.bed.gz 483.67 KB b1b6bc870363f4addbc7166673977e49
ENCFF863BNN.tabix.bed.gz.tbi 241.19 KB f036f4d103b9d7c4ced769aa7204fd60
genomic_resource.yaml 2.44 KB b1e31d3c8cfc505c115137ff0ee47ad5
statistics/