Resource

Id DNase-seq/ENCSR314IOVcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR314IOV [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interleukin-1 beta for 1 hour"]
Description
Labels
  • accession: ENCSR314IOV
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interleukin-1 beta for 1 hour
  • date_created: 2018-11-30T18:43:54.574621+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR314IOV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (39 years) treated with Interleukin-1 beta for 1 hour
  • status: released
  • submitter_comment: This dataset was originally submitted with 2 anisogenic replicates. The second replicate has been moved to ENCSR566XSD.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR314IOV float

DNase-seq_ENCSR314IOV
DNase-seq ENCSR314IOV [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interleukin-1 beta for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR314IOV [0.0861, 90.1]
n
16,357,416
mean
5.21
sd
9.74

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 163574160.51% 82758
chr1 1651721 0.66% 8325
chr2 1184575 0.49% 5990
chr3 917090 0.46% 4711
chr4 614418 0.32% 3132
chr5 751637 0.41% 3845
chr6 1017328 0.60% 5088
chr7 765987 0.48% 3904
chr8 620879 0.43% 3217
chr9 649350 0.47% 3322
chr10 761603 0.57% 3826
chr11 855962 0.63% 4322
chr12 838539 0.63% 4244
chr13 356680 0.31% 1827
chr14 586284 0.55% 2936
chr15 512959 0.50% 2623
chr16 606138 0.67% 3055
chr17 902777 1.08% 4514
chr18 278182 0.35% 1428
chr19 966068 1.65% 4644
chr20 442913 0.69% 2266
chr21 193652 0.41% 998
chr22 359088 0.71% 1846
chrX 501822 0.32% 2583
chrY 21764 0.04% 112
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 82758 1 1200 197.65 200
global segment-length histogram

Files

Filename Size md5
ENCFF925QKS.bed.gz 929.71 KB 9d32d0f22fc2beffc5728fd62687cda6
ENCFF925QKS.tabix.bed.gz 850.66 KB bb1ece2a068e19cff4fb3f63f6b51dec
ENCFF925QKS.tabix.bed.gz.tbi 327.48 KB e1fbf456d675b052e7913c337dbd5027
genomic_resource.yaml 1.6 KB 8de5933c524b35aaee0a1bcf10d716d0
statistics/