Resource

Id DNase-seq/ENCSR312ZTScontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR312ZTS [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours"]
Description
Labels
  • accession: ENCSR312ZTS
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000896/
  • biosample_summary: Homo sapiens activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours
  • date_created: 2020-04-19T18:36:54.530489+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR312ZTS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR312ZTS float

DNase-seq_ENCSR312ZTS
DNase-seq ENCSR312ZTS [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR312ZTS [0.323, 56.7]
n
7,477,039
mean
7.72
sd
7.51

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 74770390.23% 39447
chr1 760333 0.31% 4008
chr2 516894 0.21% 2728
chr3 402732 0.20% 2125
chr4 252304 0.13% 1319
chr5 321316 0.18% 1715
chr6 429595 0.25% 2247
chr7 344209 0.22% 1833
chr8 267494 0.18% 1456
chr9 304796 0.22% 1614
chr10 325655 0.24% 1729
chr11 378917 0.28% 1995
chr12 395437 0.30% 2060
chr13 148184 0.13% 772
chr14 261326 0.24% 1370
chr15 247158 0.24% 1329
chr16 315503 0.35% 1673
chr17 467480 0.56% 2450
chr18 111701 0.14% 597
chr19 534484 0.91% 2733
chr20 211868 0.33% 1144
chr21 87819 0.19% 474
chr22 184707 0.36% 978
chrX 201276 0.13% 1067
chrY 5851 0.01% 31
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 39447 3 780 189.55 180
global segment-length histogram

Files

Filename Size md5
ENCFF912GKJ.bed.gz 435.61 KB 0ce30dffea22a95bc96bb550a969fb67
ENCFF912GKJ.tabix.bed.gz 395.09 KB 6faca8031d52ce681118c64afd58936e
ENCFF912GKJ.tabix.bed.gz.tbi 202.31 KB 656e67e8cb4c4fa06fed09a3bd2ee39e
genomic_resource.yaml 2.21 KB 7119c5ef0365762ab292577a4c26711f
statistics/