Resource

Id DNase-seq/ENCSR312INUcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR312INU [biosample_summary="Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours"]
Description
Labels
  • accession: ENCSR312INU
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000537/
  • biosample_summary: Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours
  • date_created: 2020-03-30T19:01:28.115636+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR312INU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR312INU float

DNase-seq_ENCSR312INU
DNase-seq ENCSR312INU [biosample_summary="Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR312INU [0.0436, 45]
n
25,523,769
mean
2.35
sd
3.51

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 255237690.79% 113444
chr1 2419344 0.97% 10552
chr2 2004798 0.83% 8952
chr3 1364783 0.69% 6167
chr4 797403 0.42% 3583
chr5 1213210 0.67% 5426
chr6 1453026 0.85% 6380
chr7 1237556 0.78% 5465
chr8 1001195 0.69% 4574
chr9 1083660 0.78% 4836
chr10 1247550 0.93% 5535
chr11 1355170 1.00% 6009
chr12 1238391 0.93% 5489
chr13 469396 0.41% 2104
chr14 897871 0.84% 3989
chr15 928506 0.91% 4187
chr16 1028296 1.14% 4582
chr17 1482583 1.78% 6469
chr18 460557 0.57% 2077
chr19 1341267 2.29% 5816
chr20 773306 1.20% 3492
chr21 362940 0.78% 1651
chr22 641753 1.26% 2885
chrX 720888 0.46% 3222
chrY 320 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 113444 1 1380 224.99 200
global segment-length histogram

Files

Filename Size md5
ENCFF998UWK.bed.gz 1.2 MB 622e67ed1df5dafe1e35342e1e97ea32
ENCFF998UWK.tabix.bed.gz 1.11 MB b7db4617f8e6d45f3b1a43ab8f9713e8
ENCFF998UWK.tabix.bed.gz.tbi 341.61 KB 6be6e1e25081f91493caefbea06ffe2e
genomic_resource.yaml 1.72 KB 4cd692fa08acac439ccb3801f4a99d3e
statistics/