Resource
| Id | DNase-seq/ENCSR310ZGQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR310ZGQ [biosample_summary="Homo sapiens T-cell male adult (26 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (26 years) output_type: peaks audit_warning: Alignment file {ENCFF992HSL|/files/ENCFF992HSL/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 46256294 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR310ZGQ | float |
DNase-seq_ENCSR310ZGQ |
DNase-seq ENCSR310ZGQ [biosample_summary="Homo sapiens T-cell male adult (26 years)"]
|
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[0.239, 152] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 7867622 | 0.24% | 41966 |
| chr1 | 788727 | 0.32% | 4216 |
| chr2 | 550610 | 0.23% | 2959 |
| chr3 | 432073 | 0.22% | 2301 |
| chr4 | 270419 | 0.14% | 1422 |
| chr5 | 348203 | 0.19% | 1865 |
| chr6 | 470137 | 0.28% | 2508 |
| chr7 | 362641 | 0.23% | 1947 |
| chr8 | 283958 | 0.20% | 1523 |
| chr9 | 310713 | 0.22% | 1680 |
| chr10 | 354833 | 0.27% | 1895 |
| chr11 | 395479 | 0.29% | 2105 |
| chr12 | 388234 | 0.29% | 2097 |
| chr13 | 161782 | 0.14% | 870 |
| chr14 | 280953 | 0.26% | 1493 |
| chr15 | 248462 | 0.24% | 1326 |
| chr16 | 331702 | 0.37% | 1770 |
| chr17 | 498745 | 0.60% | 2659 |
| chr18 | 119775 | 0.15% | 647 |
| chr19 | 519880 | 0.89% | 2673 |
| chr20 | 216444 | 0.34% | 1161 |
| chr21 | 98516 | 0.21% | 521 |
| chr22 | 189398 | 0.37% | 1027 |
| chrX | 234961 | 0.15% | 1245 |
| chrY | 10977 | 0.02% | 56 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 41966 | 6 | 680 | 187.48 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF078NYB.bed.gz | 468.65 KB | 5834a4b1ccc544ef3a967ef3fe138fe8 |
| ENCFF078NYB.tabix.bed.gz | 424.67 KB | f421bdc73520d7cae48d33f39fa1db39 |
| ENCFF078NYB.tabix.bed.gz.tbi | 210.68 KB | b65349b65f7432dfb95d02fa7c04192c |
| genomic_resource.yaml | 1.79 KB | 0af18d1eafdd217c87a786a5df61e50e |
| statistics/ |
