Resource

Id DNase-seq/ENCSR310ZGQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR310ZGQ [biosample_summary="Homo sapiens T-cell male adult (26 years)"]
Description
Labels
  • accession: ENCSR310ZGQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (26 years)
  • date_created: 2020-04-12T18:59:13.883107+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR310ZGQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (26 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR310ZGQ float

DNase-seq_ENCSR310ZGQ

DNase-seq ENCSR310ZGQ [biosample_summary="Homo sapiens T-cell male adult (26 years)"]
HISTOGRAM FOR DNase-seq_ENCSR310ZGQ [0.239, 152]
n
7,867,622
mean
8.94
sd
14

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 78676220.24% 41966
chr1 788727 0.32% 4216
chr2 550610 0.23% 2959
chr3 432073 0.22% 2301
chr4 270419 0.14% 1422
chr5 348203 0.19% 1865
chr6 470137 0.28% 2508
chr7 362641 0.23% 1947
chr8 283958 0.20% 1523
chr9 310713 0.22% 1680
chr10 354833 0.27% 1895
chr11 395479 0.29% 2105
chr12 388234 0.29% 2097
chr13 161782 0.14% 870
chr14 280953 0.26% 1493
chr15 248462 0.24% 1326
chr16 331702 0.37% 1770
chr17 498745 0.60% 2659
chr18 119775 0.15% 647
chr19 519880 0.89% 2673
chr20 216444 0.34% 1161
chr21 98516 0.21% 521
chr22 189398 0.37% 1027
chrX 234961 0.15% 1245
chrY 10977 0.02% 56
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 41966 6 680 187.48 180
global segment-length histogram

Files

Filename Size md5
ENCFF078NYB.bed.gz 468.65 KB 5834a4b1ccc544ef3a967ef3fe138fe8
ENCFF078NYB.tabix.bed.gz 424.67 KB f421bdc73520d7cae48d33f39fa1db39
ENCFF078NYB.tabix.bed.gz.tbi 210.68 KB b65349b65f7432dfb95d02fa7c04192c
genomic_resource.yaml 1.79 KB 0af18d1eafdd217c87a786a5df61e50e
statistics/