Resource
| Id | DNase-seq/ENCSR305WLF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR305WLF [biosample_summary="Homo sapiens T-cell male adult (25 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (25 years) output_type: peaks audit_warning: Alignment file {ENCFF337XYS|/files/ENCFF337XYS/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 41638042 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR305WLF | float |
DNase-seq_ENCSR305WLF |
DNase-seq ENCSR305WLF [biosample_summary="Homo sapiens T-cell male adult (25 years)"]
|
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[0.217, 80.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 7996659 | 0.25% | 44229 |
| chr1 | 798023 | 0.32% | 4418 |
| chr2 | 562122 | 0.23% | 3134 |
| chr3 | 438282 | 0.22% | 2424 |
| chr4 | 278085 | 0.15% | 1535 |
| chr5 | 353114 | 0.19% | 1971 |
| chr6 | 471708 | 0.28% | 2616 |
| chr7 | 369070 | 0.23% | 2049 |
| chr8 | 290930 | 0.20% | 1628 |
| chr9 | 313578 | 0.23% | 1734 |
| chr10 | 353986 | 0.26% | 1989 |
| chr11 | 411218 | 0.30% | 2267 |
| chr12 | 409387 | 0.31% | 2265 |
| chr13 | 164851 | 0.14% | 905 |
| chr14 | 282527 | 0.26% | 1574 |
| chr15 | 257987 | 0.25% | 1434 |
| chr16 | 322982 | 0.36% | 1783 |
| chr17 | 494031 | 0.59% | 2716 |
| chr18 | 127418 | 0.16% | 726 |
| chr19 | 536074 | 0.91% | 2836 |
| chr20 | 223188 | 0.35% | 1256 |
| chr21 | 97330 | 0.21% | 537 |
| chr22 | 198536 | 0.39% | 1109 |
| chrX | 232360 | 0.15% | 1271 |
| chrY | 9872 | 0.02% | 52 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 44229 | 3 | 700 | 180.8 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF211KOG.bed.gz | 492.92 KB | 9dd532304b88a08aa05a179c7b4376a4 |
| ENCFF211KOG.tabix.bed.gz | 446.93 KB | 939d07d3d066c99ca33d77400723b5cc |
| ENCFF211KOG.tabix.bed.gz.tbi | 225.68 KB | 90f295a8c147cd03fcdd5510df885c6a |
| genomic_resource.yaml | 1.79 KB | b33959e9fc3a514a7e201e5288dc87c2 |
| statistics/ |
