Resource

Id DNase-seq/ENCSR303JDGcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR303JDG [biosample_summary="Homo sapiens activated T-cell female adult (21 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours"]
Description
Labels
  • accession: ENCSR303JDG
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000537/
  • biosample_summary: Homo sapiens activated T-cell female adult (21 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours
  • date_created: 2021-08-23T23:11:17.899050+00:00
  • date_released: 2021-09-02
  • doi: 10.17989/ENCSR303JDG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (21 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR303JDG float

DNase-seq_ENCSR303JDG
DNase-seq ENCSR303JDG [biosample_summary="Homo sapiens activated T-cell female adult (21 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR303JDG [0.0859, 71.7]
n
17,462,056
mean
4.74
sd
7.32

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 174620560.54% 94804
chr1 1716466 0.69% 9292
chr2 1291525 0.53% 7082
chr3 1015054 0.51% 5528
chr4 647088 0.34% 3549
chr5 816794 0.45% 4498
chr6 1049893 0.61% 5694
chr7 811085 0.51% 4426
chr8 717113 0.49% 3931
chr9 711107 0.51% 3875
chr10 793283 0.59% 4343
chr11 876158 0.65% 4789
chr12 863488 0.65% 4660
chr13 372727 0.33% 2036
chr14 591447 0.55% 3232
chr15 576667 0.57% 3154
chr16 693516 0.77% 3708
chr17 970826 1.17% 5154
chr18 310335 0.39% 1723
chr19 960504 1.64% 5014
chr20 499794 0.78% 2735
chr21 225297 0.48% 1235
chr22 410504 0.81% 2209
chrX 541285 0.35% 2936
chrY 100 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 94804 1 860 184.19 180
global segment-length histogram

Files

Filename Size md5
ENCFF725EBY.bed.gz 1.04 MB 8ab5895fa2584181d0e1f0d0be5db85d
ENCFF725EBY.tabix.bed.gz 970.59 KB 65305293f5f999804ad7da0b29ac927c
ENCFF725EBY.tabix.bed.gz.tbi 356.41 KB 2f49f2834ec3138778167c492ca2776a
genomic_resource.yaml 1.72 KB ead783a6c943f98cebeca417ecfc3df3
statistics/