Resource

Id DNase-seq/ENCSR299QGIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR299QGI [biosample_summary="Homo sapiens heart left ventricle tissue male adult (43 years)"]
Description
Labels
  • accession: ENCSR299QGI
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002084/
  • biosample_summary: Homo sapiens heart left ventricle tissue male adult (43 years)
  • date_created: 2019-09-12T18:22:18.160856+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR299QGI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (43 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR299QGI float

DNase-seq_ENCSR299QGI

DNase-seq ENCSR299QGI [biosample_summary="Homo sapiens heart left ventricle tissue male adult (43 years)"]
HISTOGRAM FOR DNase-seq_ENCSR299QGI [0.0415, 25.9]
n
18,163,017
mean
2.06
sd
2.65

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 181630170.56% 96793
chr1 1795614 0.72% 9435
chr2 1330360 0.55% 7270
chr3 1101417 0.56% 5928
chr4 694690 0.37% 3768
chr5 882294 0.49% 4787
chr6 936440 0.55% 5096
chr7 830330 0.52% 4477
chr8 798640 0.55% 4377
chr9 830082 0.60% 4388
chr10 907804 0.68% 4854
chr11 1056737 0.78% 5586
chr12 874219 0.66% 4598
chr13 388978 0.34% 2111
chr14 578680 0.54% 3084
chr15 635215 0.62% 3393
chr16 676844 0.75% 3544
chr17 943720 1.13% 4890
chr18 352036 0.44% 1895
chr19 851715 1.45% 4285
chr20 526093 0.82% 2787
chr21 238365 0.51% 1245
chr22 449265 0.88% 2380
chrX 466124 0.30% 2516
chrY 17355 0.03% 99
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 96793 2 856 187.65 180
global segment-length histogram

Files

Filename Size md5
ENCFF221GCG.bed.gz 1.05 MB b6db2fac5d525e6a3a9c6a86b50b6990
ENCFF221GCG.tabix.bed.gz 977.7 KB 60c173c5999a513e36a5044b30094561
ENCFF221GCG.tabix.bed.gz.tbi 376.77 KB 7233e78da43dd826e84b20fd4addd946
genomic_resource.yaml 1.24 KB 543f13983816c53e0e521cea532a6819
statistics/