Resource

Id DNase-seq/ENCSR299BQGcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR299BQG [biosample_summary="Homo sapiens T-cell female adult (22 years)"]
Description
Labels
  • accession: ENCSR299BQG
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell female adult (22 years)
  • date_created: 2020-03-30T19:01:14.922090+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR299BQG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (22 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR299BQG float

DNase-seq_ENCSR299BQG
DNase-seq ENCSR299BQG [biosample_summary="Homo sapiens T-cell female adult (22 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR299BQG [0.114, 66.7]
n
7,729,938
mean
5.24
sd
6.95

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 77299380.24% 42342
chr1 783317 0.31% 4252
chr2 535490 0.22% 2964
chr3 416970 0.21% 2296
chr4 283052 0.15% 1549
chr5 348032 0.19% 1919
chr6 447411 0.26% 2444
chr7 355829 0.22% 1995
chr8 316873 0.22% 1761
chr9 322539 0.23% 1758
chr10 345653 0.26% 1881
chr11 400517 0.30% 2203
chr12 393553 0.30% 2142
chr13 157045 0.14% 850
chr14 282233 0.26% 1547
chr15 238420 0.23% 1326
chr16 306259 0.34% 1673
chr17 459719 0.55% 2531
chr18 112546 0.14% 633
chr19 501382 0.86% 2656
chr20 218362 0.34% 1210
chr21 95198 0.20% 524
chr22 183098 0.36% 1016
chrX 226300 0.15% 1211
chrY 140 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 42342 1 676 182.56 180
global segment-length histogram

Files

Filename Size md5
ENCFF990SUS.bed.gz 476.96 KB b3fc04b70a9f04a7c3c1f9ef22db7fb9
ENCFF990SUS.tabix.bed.gz 434.0 KB 42fc7d538109b26bfb534018d3213186
ENCFF990SUS.tabix.bed.gz.tbi 203.38 KB 6993e46435b8ccba9c733b96c326b687
genomic_resource.yaml 1.6 KB d7cb6e89a2fa0aa0e145359bab9ba2bd
statistics/