Resource
| Id | DNase-seq/ENCSR297ORG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR297ORG [biosample_summary="Homo sapiens muscle of leg tissue male embryo (96 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (96 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN332FNN|/analyses/ENCAN332FNN/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF379QYU|/files/ENCFF379QYU/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 45762069 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF320WEE|/files/ENCFF320WEE/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 45519522 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR297ORG | float |
DNase-seq_ENCSR297ORG |
DNase-seq ENCSR297ORG [biosample_summary="Homo sapiens muscle of leg tissue male embryo (96 days)"]
|
 |
[3, 968] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 20813273 | 0.65% | 138390 |
| chr1 | 1812003 | 0.73% | 12053 |
| chr2 | 1726149 | 0.71% | 11470 |
| chr3 | 1372265 | 0.69% | 9120 |
| chr4 | 1166275 | 0.61% | 7758 |
| chr5 | 1239860 | 0.68% | 8239 |
| chr6 | 1290673 | 0.76% | 8582 |
| chr7 | 1080076 | 0.68% | 7181 |
| chr8 | 1016848 | 0.70% | 6762 |
| chr9 | 882807 | 0.64% | 5869 |
| chr10 | 1054633 | 0.79% | 7006 |
| chr11 | 1021739 | 0.76% | 6793 |
| chr12 | 997706 | 0.75% | 6631 |
| chr13 | 626779 | 0.55% | 4170 |
| chr14 | 671421 | 0.63% | 4466 |
| chr15 | 643273 | 0.63% | 4281 |
| chr16 | 611350 | 0.68% | 4067 |
| chr17 | 768759 | 0.92% | 5118 |
| chr18 | 492138 | 0.61% | 3270 |
| chr19 | 585361 | 1.00% | 3894 |
| chr20 | 511001 | 0.79% | 3402 |
| chr21 | 256321 | 0.55% | 1703 |
| chr22 | 320860 | 0.63% | 2136 |
| chrX | 640976 | 0.41% | 4259 |
| chrY | 24000 | 0.04% | 160 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 138390 | 5 | 450 | 150.4 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF699XQF.bed.gz | 1.31 MB | efa2547d5fd6d51d66c874dec077fc42 |
| ENCFF699XQF.tabix.bed.gz | 1.13 MB | 128b754dfaf9fbcb674ec004e21ba20a |
| ENCFF699XQF.tabix.bed.gz.tbi | 569.06 KB | 89bf101492cd4092d05807f0ba6cfec6 |
| genomic_resource.yaml | 2.59 KB | 2158f45be5e2d03619fae1686ef1df04 |
| statistics/ |