Resource

Id DNase-seq/ENCSR295UXTcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR295UXT [biosample_summary="Homo sapiens CD8-positive, alpha-beta memory T cell"]
Description
Labels
  • accession: ENCSR295UXT
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000909/
  • biosample_summary: Homo sapiens CD8-positive, alpha-beta memory T cell
  • date_created: 2022-02-07T22:20:21.412344+00:00
  • date_released: 2022-02-25
  • doi: 10.17989/ENCSR295UXT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR295UXT float

DNase-seq_ENCSR295UXT

DNase-seq ENCSR295UXT [biosample_summary="Homo sapiens CD8-positive, alpha-beta memory T cell"]
HISTOGRAM FOR DNase-seq_ENCSR295UXT [0.0654, 69.8]
n
12,789,121
mean
4.94
sd
7.82

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 127891210.40% 63307
chr1 1271905 0.51% 6317
chr2 938454 0.39% 4650
chr3 713126 0.36% 3564
chr4 461317 0.24% 2276
chr5 596147 0.33% 2970
chr6 789266 0.46% 3849
chr7 592091 0.37% 2938
chr8 469630 0.32% 2362
chr9 510354 0.37% 2538
chr10 592046 0.44% 2940
chr11 644890 0.48% 3224
chr12 653977 0.49% 3245
chr13 287691 0.25% 1402
chr14 458285 0.43% 2259
chr15 410598 0.40% 2062
chr16 506941 0.56% 2491
chr17 728255 0.87% 3597
chr18 211434 0.26% 1069
chr19 760227 1.30% 3627
chr20 348629 0.54% 1737
chr21 147969 0.32% 731
chr22 290712 0.57% 1463
chrX 405057 0.26% 1995
chrY 120 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 63307 3 1220 202.02 200
global segment-length histogram

Files

Filename Size md5
ENCFF041GGN.bed.gz 707.04 KB d830ca61caf446f1c6a660898329abc0
ENCFF041GGN.tabix.bed.gz 649.09 KB e15e49d97bc773ede866666d677a08bb
ENCFF041GGN.tabix.bed.gz.tbi 271.16 KB 1ecbad435283479b7688c1534ea71cc5
genomic_resource.yaml 1.17 KB e304f9963f98c71d807b635a9e9d7d9d
statistics/