Resource
| Id | DNase-seq/ENCSR295DUI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR295DUI [biosample_summary="Homo sapiens left kidney tissue female embryo (87 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (87 days) output_type: peaks audit_warning: Alignment file {ENCFF078GPT|/files/ENCFF078GPT/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 46355646 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR295DUI | float |
DNase-seq_ENCSR295DUI |
DNase-seq ENCSR295DUI [biosample_summary="Homo sapiens left kidney tissue female embryo (87 days)"]
|
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[0.151, 20.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 15344779 | 0.48% | 82732 |
| chr1 | 1378485 | 0.55% | 7413 |
| chr2 | 1211742 | 0.50% | 6587 |
| chr3 | 984295 | 0.50% | 5270 |
| chr4 | 823846 | 0.43% | 4465 |
| chr5 | 854665 | 0.47% | 4595 |
| chr6 | 930574 | 0.54% | 4991 |
| chr7 | 790935 | 0.50% | 4311 |
| chr8 | 701951 | 0.48% | 3783 |
| chr9 | 644839 | 0.47% | 3466 |
| chr10 | 752067 | 0.56% | 4086 |
| chr11 | 777880 | 0.58% | 4180 |
| chr12 | 758971 | 0.57% | 4112 |
| chr13 | 399426 | 0.35% | 2172 |
| chr14 | 506118 | 0.47% | 2682 |
| chr15 | 508283 | 0.50% | 2724 |
| chr16 | 488993 | 0.54% | 2657 |
| chr17 | 639362 | 0.77% | 3414 |
| chr18 | 359127 | 0.45% | 1947 |
| chr19 | 600821 | 1.02% | 3065 |
| chr20 | 374616 | 0.58% | 2082 |
| chr21 | 167682 | 0.36% | 917 |
| chr22 | 252890 | 0.50% | 1376 |
| chrX | 436531 | 0.28% | 2432 |
| chrY | 680 | <0.01% | 5 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 82732 | 2 | 900 | 185.48 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF142TGR.bed.gz | 876.18 KB | 62b38fa63fe1ff0c6f71d259df819f71 |
| ENCFF142TGR.tabix.bed.gz | 788.6 KB | 4db86637af8d81628e5bb670a6b30a4e |
| ENCFF142TGR.tabix.bed.gz.tbi | 407.13 KB | 39732c15d73d3860d0af68ffd23f3dd4 |
| genomic_resource.yaml | 1.84 KB | 5db0764fee3d8b6d954ce7c40c4184e6 |
| statistics/ |
