Resource

Id DNase-seq/ENCSR294QCRcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR294QCR [biosample_summary="Homo sapiens muscle of leg tissue male embryo (97 days)"]
Description
Labels
  • accession: ENCSR294QCR
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001383/
  • biosample_summary: Homo sapiens muscle of leg tissue male embryo (97 days)
  • date_created: 2015-09-16T21:42:36.779430+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR294QCR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (97 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR294QCR float

DNase-seq_ENCSR294QCR

DNase-seq ENCSR294QCR [biosample_summary="Homo sapiens muscle of leg tissue male embryo (97 days)"]
HISTOGRAM FOR DNase-seq_ENCSR294QCR [0.247, 28.5]
n
10,465,370
mean
3.02
sd
2.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 104653700.33% 58491
chr1 938518 0.38% 5238
chr2 863822 0.36% 4853
chr3 704307 0.36% 3954
chr4 538596 0.28% 3056
chr5 586860 0.32% 3279
chr6 654401 0.38% 3620
chr7 530047 0.33% 2994
chr8 502745 0.35% 2831
chr9 452597 0.33% 2525
chr10 497676 0.37% 2816
chr11 533620 0.40% 2964
chr12 530125 0.40% 2965
chr13 313494 0.27% 1737
chr14 337364 0.32% 1891
chr15 332646 0.33% 1855
chr16 312513 0.35% 1757
chr17 399148 0.48% 2241
chr18 224069 0.28% 1273
chr19 398228 0.68% 2040
chr20 258639 0.40% 1467
chr21 116122 0.25% 652
chr22 165811 0.33% 948
chrX 265837 0.17% 1486
chrY 8185 0.01% 49
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 58491 4 880 178.92 180
global segment-length histogram

Files

Filename Size md5
ENCFF834MZK.bed.gz 623.48 KB 693b607f7e1564c915b65ec5c4e079c0
ENCFF834MZK.tabix.bed.gz 551.79 KB ccd339a48e1cea6486668475c9d70549
ENCFF834MZK.tabix.bed.gz.tbi 332.28 KB 5aa9c2ba91f141d86915edcd6362c486
genomic_resource.yaml 1.83 KB 6cf90660dc20a518fb2e8825fb6ab4f3
statistics/