Resource

Id DNase-seq/ENCSR294DNDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR294DND [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours"]
Description
Labels
  • accession: ENCSR294DND
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000669/
  • biosample_summary: Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours
  • date_created: 2020-04-20T23:45:34.945149+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR294DND
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR294DND float

DNase-seq_ENCSR294DND
DNase-seq ENCSR294DND [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR294DND [0.0465, 36.1]
n
21,428,712
mean
2.32
sd
3.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 214287120.67% 107895
chr1 2101662 0.84% 10503
chr2 1747437 0.72% 8859
chr3 1159290 0.58% 5825
chr4 671639 0.35% 3412
chr5 960889 0.53% 4865
chr6 1217135 0.71% 6058
chr7 1013369 0.64% 5081
chr8 809572 0.56% 4189
chr9 909352 0.66% 4614
chr10 1029791 0.77% 5246
chr11 1106130 0.82% 5557
chr12 974603 0.73% 4844
chr13 385102 0.34% 1975
chr14 756506 0.71% 3866
chr15 806649 0.79% 4093
chr16 869693 0.96% 4338
chr17 1229360 1.48% 6036
chr18 380996 0.47% 1931
chr19 1159015 1.98% 5692
chr20 692869 1.08% 3588
chr21 303335 0.65% 1529
chr22 587313 1.16% 2958
chrX 537708 0.34% 2732
chrY 19297 0.03% 104
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 107895 1 1020 198.61 180
global segment-length histogram

Files

Filename Size md5
ENCFF432NVH.bed.gz 1.14 MB 2b2661f54997af1c105d0a6202c50a13
ENCFF432NVH.tabix.bed.gz 1.05 MB 0e0888adb27b61844d7734a0e01b8fe9
ENCFF432NVH.tabix.bed.gz.tbi 320.57 KB 773356fd8ffbcff32709cee3e730d89b
genomic_resource.yaml 1.85 KB aef89a3c4559cdead3f0ef8a00684aaa
statistics/