Resource

Id DNase-seq/ENCSR290NGLcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR290NGL [biosample_summary="Homo sapiens T-cell female adult (32 years)"]
Description
Labels
  • accession: ENCSR290NGL
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell female adult (32 years)
  • date_created: 2020-04-12T19:00:08.902547+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR290NGL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (32 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR290NGL float

DNase-seq_ENCSR290NGL
DNase-seq ENCSR290NGL [biosample_summary="Homo sapiens T-cell female adult (32 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR290NGL [0.105, 33]
n
6,666,282
mean
4.51
sd
4.68

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 66662820.21% 34682
chr1 677725 0.27% 3520
chr2 449797 0.19% 2348
chr3 358270 0.18% 1859
chr4 223134 0.12% 1148
chr5 291705 0.16% 1515
chr6 379971 0.22% 1969
chr7 306718 0.19% 1588
chr8 235722 0.16% 1248
chr9 257837 0.19% 1347
chr10 293372 0.22% 1524
chr11 338603 0.25% 1767
chr12 336362 0.25% 1760
chr13 130060 0.11% 656
chr14 241766 0.23% 1243
chr15 205860 0.20% 1088
chr16 287341 0.32% 1503
chr17 435623 0.52% 2278
chr18 96762 0.12% 518
chr19 507488 0.87% 2542
chr20 178589 0.28% 969
chr21 80100 0.17% 419
chr22 170114 0.33% 920
chrX 183102 0.12% 951
chrY 261 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 34682 4 720 192.21 191
global segment-length histogram

Files

Filename Size md5
ENCFF409NJS.bed.gz 385.63 KB a4860dcc17560af4f8a908781207d592
ENCFF409NJS.tabix.bed.gz 351.01 KB ee45589b883d2618334dab989f10c17b
ENCFF409NJS.tabix.bed.gz.tbi 182.64 KB 01d8efb25d125e13f3d706a6abf660f2
genomic_resource.yaml 2.01 KB cb7c031a4cefba0cbff3e6b461e72594
statistics/