Resource

Id DNase-seq/ENCSR284GAGcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR284GAG [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours"]
Description
Labels
  • accession: ENCSR284GAG
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours
  • date_created: 2020-04-20T23:45:59.836894+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR284GAG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR284GAG float

DNase-seq_ENCSR284GAG
DNase-seq ENCSR284GAG [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR284GAG [0.371, 40.5]
n
5,809,901
mean
6.02
sd
5.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 58099010.18% 31833
chr1 610084 0.25% 3327
chr2 400728 0.17% 2205
chr3 311841 0.16% 1713
chr4 197720 0.10% 1065
chr5 250045 0.14% 1377
chr6 333189 0.20% 1830
chr7 262979 0.17% 1461
chr8 205383 0.14% 1151
chr9 232534 0.17% 1275
chr10 238008 0.18% 1325
chr11 305257 0.23% 1672
chr12 299675 0.22% 1648
chr13 114669 0.10% 627
chr14 200628 0.19% 1097
chr15 188047 0.18% 1040
chr16 245590 0.27% 1334
chr17 361341 0.43% 1979
chr18 87957 0.11% 485
chr19 430700 0.73% 2260
chr20 161899 0.25% 906
chr21 65687 0.14% 363
chr22 143930 0.28% 802
chrX 156317 0.10% 861
chrY 5693 0.01% 30
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 31833 6 680 182.51 180
global segment-length histogram

Files

Filename Size md5
ENCFF864RTV.bed.gz 349.32 KB b4df654a6bd1eedf9972f4f6211af281
ENCFF864RTV.tabix.bed.gz 315.41 KB 1f23e43ce74476cbdada698fdecc7919
ENCFF864RTV.tabix.bed.gz.tbi 178.77 KB 16f44ff9d130760786aabd38970ad71b
genomic_resource.yaml 2.43 KB 8dc50f101077d5d381525a919c51c845
statistics/