Resource

Id DNase-seq/ENCSR283TMEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR283TME [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (30 years)"]
Description
Labels
  • accession: ENCSR283TME
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000900/
  • biosample_summary: Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (30 years)
  • date_created: 2019-08-24T00:09:40.957952+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR283TME
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (30 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR283TME float

DNase-seq_ENCSR283TME
DNase-seq ENCSR283TME [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (30 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR283TME [0.0469, 81.2]
n
20,787,965
mean
2.39
sd
5.68

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 207879650.65% 116461
chr1 1892294 0.76% 10702
chr2 1523112 0.63% 8586
chr3 1002774 0.51% 5674
chr4 672093 0.35% 3726
chr5 810033 0.45% 4525
chr6 833882 0.49% 4692
chr7 1079716 0.68% 6075
chr8 738319 0.51% 4108
chr9 979853 0.71% 5508
chr10 1049825 0.78% 5882
chr11 1299498 0.96% 7275
chr12 963123 0.72% 5387
chr13 340857 0.30% 1883
chr14 768200 0.72% 4207
chr15 627313 0.62% 3602
chr16 942322 1.04% 5225
chr17 1507501 1.81% 8428
chr18 209619 0.26% 1211
chr19 1147922 1.96% 6337
chr20 735002 1.14% 4154
chr21 381739 0.82% 2091
chr22 919694 1.81% 5094
chrX 349971 0.22% 2005
chrY 13303 0.02% 84
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 116461 2 880 178.5 180
global segment-length histogram

Files

Filename Size md5
ENCFF621DXQ.bed.gz 1.18 MB a10837740c1ca1b605c67c833c8e1410
ENCFF621DXQ.tabix.bed.gz 1.09 MB dcf1617181d61ff05a0a076fb644cf28
ENCFF621DXQ.tabix.bed.gz.tbi 254.6 KB 8b9bec7404594d444b47e19e308521a3
genomic_resource.yaml 1.32 KB f58142a7f7f13a9aef6110c749940b0b
statistics/