Resource

Id DNase-seq/ENCSR279SXQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR279SXQ [biosample_summary="Homo sapiens left colon tissue female adult (46 years)"]
Description
Labels
  • accession: ENCSR279SXQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0008971/
  • biosample_summary: Homo sapiens left colon tissue female adult (46 years)
  • date_created: 2019-11-01T17:50:58.118953+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR279SXQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (46 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR279SXQ float

DNase-seq_ENCSR279SXQ

DNase-seq ENCSR279SXQ [biosample_summary="Homo sapiens left colon tissue female adult (46 years)"]
HISTOGRAM FOR DNase-seq_ENCSR279SXQ [0.0543, 54.1]
n
22,644,640
mean
2.83
sd
3.81

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 226446400.70% 119662
chr1 2231219 0.90% 11725
chr2 1698598 0.70% 9055
chr3 1209356 0.61% 6522
chr4 857251 0.45% 4583
chr5 1011077 0.56% 5430
chr6 1168704 0.68% 6281
chr7 1145487 0.72% 6064
chr8 910669 0.63% 4895
chr9 1006852 0.73% 5302
chr10 1059013 0.79% 5620
chr11 1291426 0.96% 6691
chr12 1022997 0.77% 5447
chr13 446891 0.39% 2407
chr14 784751 0.73% 4114
chr15 759864 0.75% 4022
chr16 957739 1.06% 4995
chr17 1319726 1.59% 6776
chr18 436609 0.54% 2341
chr19 1246283 2.13% 6323
chr20 657243 1.02% 3532
chr21 301725 0.65% 1605
chr22 565148 1.11% 2947
chrX 555892 0.36% 2984
chrY 120 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 119662 1 980 189.24 180
global segment-length histogram

Files

Filename Size md5
ENCFF042YMQ.bed.gz 1.29 MB 23a35cc10d17f2bce743540a26b480a4
ENCFF042YMQ.tabix.bed.gz 1.18 MB a901748ae2dd501daf31a0826afcd1cc
ENCFF042YMQ.tabix.bed.gz.tbi 401.14 KB b8c1bcf94ab973ff516cd04ebd1ca669
genomic_resource.yaml 1.22 KB ef8fea48e401b1537fadcf03425fe544
statistics/