Resource

Id DNase-seq/ENCSR278FVOcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR278FVO [biosample_summary="Homo sapiens neuronal stem cell originated from H1"]
Description
Labels
  • accession: ENCSR278FVO
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000047/
  • biosample_summary: Homo sapiens neuronal stem cell originated from H1
  • date_created: 2015-09-16T21:41:58.407892+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR278FVO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR278FVO float

DNase-seq_ENCSR278FVO

DNase-seq ENCSR278FVO [biosample_summary="Homo sapiens neuronal stem cell originated from H1"]
HISTOGRAM FOR DNase-seq_ENCSR278FVO [0.125, 23.9]
n
15,219,054
mean
1.52
sd
1.43

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 152190540.47% 72733
chr1 1399710 0.56% 6613
chr2 1171943 0.48% 5688
chr3 925293 0.47% 4415
chr4 778154 0.41% 3687
chr5 827852 0.46% 3967
chr6 948196 0.56% 4474
chr7 759996 0.48% 3696
chr8 686999 0.47% 3373
chr9 630786 0.46% 3061
chr10 694453 0.52% 3395
chr11 774044 0.57% 3723
chr12 782381 0.59% 3678
chr13 393258 0.34% 1905
chr14 494307 0.46% 2321
chr15 510343 0.50% 2434
chr16 520747 0.58% 2496
chr17 677781 0.81% 3162
chr18 342259 0.43% 1652
chr19 659853 1.13% 2976
chr20 390842 0.61% 1865
chr21 147662 0.32% 713
chr22 270925 0.53% 1303
chrX 416926 0.27% 2061
chrY 14344 0.03% 75
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 72733 1 980 209.25 200
global segment-length histogram

Files

Filename Size md5
ENCFF732IUC.bed.gz 756.84 KB dda8c873833deaed89187ce953ee54c0
ENCFF732IUC.tabix.bed.gz 696.23 KB 4d30f65a8403b3c97e0061ea43662aa8
ENCFF732IUC.tabix.bed.gz.tbi 353.42 KB 42a8a33c68c7a71b153f97db1834e7b9
genomic_resource.yaml 2.02 KB a0a5538a350ed51cf540621e9b8ef95c
statistics/